Variant report

Variant	rs1333105
Chromosome Location	chr9:9305655-9305656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10116111	0.84[CHB][hapmap]
rs10116635	0.84[CHB][hapmap]
rs10117765	0.83[CHB][hapmap]
rs10120509	0.95[JPT][hapmap];0.95[YRI][hapmap]
rs10759052	0.84[CHB][hapmap]
rs10816074	0.90[CHB][hapmap]
rs10816075	0.89[CHB][hapmap]
rs10816076	0.84[CHB][hapmap]
rs10816090	0.94[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs10977651	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12350625	0.93[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs1333121	0.86[CEU][hapmap]
rs1889105	0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap]
rs2780069	0.81[JPT][hapmap]
rs4146135	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4146136	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs4146137	0.84[CHB][hapmap]
rs4297075	0.90[CHB][hapmap]
rs4302899	0.89[CHB][hapmap]
rs4319157	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs4492438	0.84[CHB][hapmap]
rs4568657	0.89[CHB][hapmap]
rs4628307	0.84[CHB][hapmap]
rs4742582	0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs6477383	0.84[CHB][hapmap]
rs6477384	0.84[CHB][hapmap]
rs7872553	0.89[CHB][hapmap]
rs7874373	0.82[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv613305	chr9:9263980-9310461	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv892255	chr9:9264932-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv892256	chr9:9269284-9348102	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv892257	chr9:9304839-9349679	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
12	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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