Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10116111	0.84[JPT][hapmap]
rs10116635	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10117765	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10118203	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs10435819	0.81[GIH][hapmap];0.84[MEX][hapmap]
rs10435820	0.81[GIH][hapmap];0.84[MEX][hapmap]
rs10759052	0.82[CHB][hapmap]
rs10816066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10816067	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10816068	1.00[CHB][hapmap]
rs10816071	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs10816074	0.88[CHB][hapmap]
rs10816075	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs10977568	0.89[CHB][hapmap];0.84[MEX][hapmap]
rs12350625	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs12685122	0.89[CHB][hapmap];0.82[LWK][hapmap];0.84[MEX][hapmap]
rs2120923	0.89[CHB][hapmap]
rs2890856	0.81[GIH][hapmap]
rs4146135	0.93[JPT][hapmap]
rs4146137	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs4297075	0.88[CHB][hapmap]
rs4302899	0.89[JPT][hapmap]
rs4319157	0.84[JPT][hapmap]
rs4357351	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4568657	0.88[CHB][hapmap]
rs4626664	0.84[JPT][hapmap]
rs4628307	0.84[JPT][hapmap]
rs7031995	0.94[CHB][hapmap]
rs7035832	0.94[CHB][hapmap]
rs7872553	0.84[CEU][hapmap];0.88[CHB][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.92[MEX][hapmap]
rs7874373	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2761491	chr9:9139951-9222892	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv613303	chr9:9187539-9225463	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9215200-9218800	Weak transcription	Fetal Lung	lung
2	chr9:9216800-9217400	Enhancers	HUES64 Cell Line	embryonic stem cell

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