Variant report

Variant	rs2382002
Chromosome Location	chr9:9332922-9332923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10114510	0.88[JPT][hapmap]
rs10125868	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs10125869	0.89[JPT][hapmap]
rs1023218	0.90[JPT][hapmap]
rs10511523	1.00[CEU][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes]
rs10816090	0.82[CEU][hapmap]
rs10816094	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs10977651	0.80[CEU][hapmap]
rs12236616	0.86[EUR][1000 genomes]
rs1332795	0.80[JPT][hapmap]
rs1332796	1.00[CEU][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes]
rs1332800	1.00[CEU][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes]
rs1332802	0.89[JPT][hapmap]
rs1332803	0.89[JPT][hapmap]
rs1332806	0.89[JPT][hapmap]
rs1332812	0.89[JPT][hapmap]
rs1333121	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs1412880	0.89[JPT][hapmap]
rs1412881	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes]
rs1547287	0.89[JPT][hapmap]
rs1889106	0.89[JPT][hapmap]
rs2001	0.89[JPT][hapmap]
rs2039419	0.89[JPT][hapmap]
rs2065511	0.94[JPT][hapmap];0.91[EUR][1000 genomes]
rs2065512	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes]
rs2151325	0.89[JPT][hapmap]
rs2225596	1.00[CEU][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes]
rs2780071	1.00[CEU][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes]
rs2780072	0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs2780073	0.94[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes]
rs2780075	0.89[JPT][hapmap]
rs2780076	0.89[JPT][hapmap]
rs3904501	0.89[JPT][hapmap]
rs4740976	0.89[JPT][hapmap]
rs4742585	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes]
rs4742586	0.95[EUR][1000 genomes]
rs7047537	0.89[JPT][hapmap]
rs7850556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs7866679	0.94[EUR][1000 genomes]
rs9299094	0.89[JPT][hapmap]
rs950196	0.89[JPT][hapmap]
rs9644896	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892255	chr9:9264932-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv892256	chr9:9269284-9348102	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv892257	chr9:9304839-9349679	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv613306	chr9:9311838-9338417	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
12	nsv892259	chr9:9311838-9348102	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
13	nsv520832	chr9:9326805-9364637	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9329800-9333400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:9330200-9335800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:9331200-9340000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:9331600-9333000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:9332400-9333200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:9332400-9341200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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