Variant report

Variant	nsv613938
Chromosome Location	chr9:26302903-26322639
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 551 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:551 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2254070	chr9:26302903-26302904	Enhancers Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs550947989	chr9:26302930-26302931	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs184517778	chr9:26302947-26302948	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs17719825	chr9:26302964-26302965	Enhancers Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs555335062	chr9:26302997-26302998	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573335272	chr9:26303000-26303001	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs534374460	chr9:26303141-26303142	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558899282	chr9:26303156-26303157	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577625021	chr9:26303162-26303163	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs189787512	chr9:26303169-26303170	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs562937729	chr9:26303207-26303208	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574932161	chr9:26303233-26303234	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs140466922	chr9:26303255-26303256	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs375661844	chr9:26303258-26303259	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs560823209	chr9:26303269-26303270	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62543080	chr9:26303273-26303274	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs377633313	chr9:26303302-26303303	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs575998282	chr9:26303313-26303314	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs145639666	chr9:26303360-26303361	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs532636437	chr9:26303416-26303417	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs114010073	chr9:26303421-26303422	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs569260492	chr9:26303442-26303443	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs369676413	chr9:26303448-26303449	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs557380514	chr9:26303461-26303462	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs62543081	chr9:26303473-26303474	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs376543044	chr9:26303477-26303478	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs75795170	chr9:26303500-26303501	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs181173632	chr9:26303508-26303509	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs185528442	chr9:26303520-26303521	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138462677	chr9:26303537-26303538	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs571002908	chr9:26303541-26303542	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538334809	chr9:26303542-26303543	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374469071	chr9:26303594-26303595	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs556670103	chr9:26303643-26303644	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs368706478	chr9:26303650-26303651	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs575019769	chr9:26303661-26303662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs190338015	chr9:26303672-26303673	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs554279624	chr9:26303700-26303701	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs545413090	chr9:26303709-26303710	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs181560664	chr9:26303714-26303715	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs186234430	chr9:26303783-26303784	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs574193498	chr9:26303806-26303807	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs7850022	chr9:26303820-26303821	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs7863626	chr9:26303825-26303826	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs376366421	chr9:26303855-26303856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs544695655	chr9:26303861-26303862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs562941317	chr9:26303881-26303882	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs530231162	chr9:26303906-26303907	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs370982870	chr9:26303922-26303923	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs566753155	chr9:26303931-26303932	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Glioblastoma multiforme	21525872	CNVD

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26294000-26309600	Weak transcription	Hela-S3	cervix
2	chr9:26294200-26303000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:26294200-26303000	Weak transcription	NHDF-Ad	bronchial
4	chr9:26301800-26304400	Enhancers	HUVEC	blood vessel
5	chr9:26302600-26303000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:26302600-26303600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:26302800-26303600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr9:26303000-26303400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:26303000-26303600	Enhancers	NHDF-Ad	bronchial
10	chr9:26303200-26304800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:26303400-26309600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:26303600-26306600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:26303600-26307800	Weak transcription	NHDF-Ad	bronchial
14	chr9:26303600-26308200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:26304400-26308000	Weak transcription	HUVEC	blood vessel
16	chr9:26304800-26310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:26306600-26306800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr9:26306800-26309600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:26307800-26308400	Enhancers	NHDF-Ad	bronchial
20	chr9:26308000-26310600	Enhancers	HUVEC	blood vessel
21	chr9:26308200-26308600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:26308400-26308600	Weak transcription	NHDF-Ad	bronchial
23	chr9:26308600-26309000	Enhancers	NHDF-Ad	bronchial
24	chr9:26308600-26310000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:26309000-26309800	Weak transcription	NHDF-Ad	bronchial
26	chr9:26309600-26310400	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr9:26309600-26310400	Enhancers	Hela-S3	cervix
28	chr9:26309600-26310800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:26309800-26310600	Enhancers	NHDF-Ad	bronchial
30	chr9:26310000-26310400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:26310000-26311000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:26310200-26310800	Enhancers	Fetal Lung	lung
33	chr9:26310400-26315200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr9:26315200-26315800	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr9:26322000-26322200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:26322000-26322200	Enhancers	Brain Hippocampus Middle	brain
37	chr9:26322400-26324800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links