Variant report

Variant	rs62543080
Chromosome Location	chr9:26303273-26303274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10511770	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10967272	0.81[AMR][1000 genomes]
rs10967275	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967278	0.82[ASN][1000 genomes]
rs10967280	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967293	0.90[ASN][1000 genomes]
rs10967301	0.86[ASN][1000 genomes]
rs10967302	0.86[ASN][1000 genomes]
rs12378059	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12378060	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12553446	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17776101	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2082714	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2099436	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34581307	0.83[ASN][1000 genomes]
rs353433	0.81[ASN][1000 genomes]
rs62542516	0.82[ASN][1000 genomes]
rs62542519	0.83[ASN][1000 genomes]
rs62542520	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62542521	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62543079	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62543081	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72714170	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7470949	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033265	chr9:26242026-26425832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv869744	chr9:26256188-26435849	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv430012	chr9:26257238-26395900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv430014	chr9:26265500-26435047	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2752291	chr9:26265534-26395883	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1018547	chr9:26265534-26424759	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1027596	chr9:26265534-26425832	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1016727	chr9:26265534-26434482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv613933	chr9:26265879-26417858	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv613934	chr9:26265879-26423082	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv613935	chr9:26273322-26417858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv613936	chr9:26273358-26417858	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv613937	chr9:26275374-26317307	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv1020092	chr9:26283966-26407717	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv540102	chr9:26283966-26407717	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1022897	chr9:26287751-26305300	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv1024330	chr9:26295612-26315226	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv466329	chr9:26302903-26322639	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
21	nsv613938	chr9:26302903-26322639	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26294000-26309600	Weak transcription	Hela-S3	cervix
2	chr9:26301800-26304400	Enhancers	HUVEC	blood vessel
3	chr9:26302600-26303600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:26302800-26303600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr9:26303000-26303400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:26303000-26303600	Enhancers	NHDF-Ad	bronchial
7	chr9:26303200-26304800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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