Variant report
| Variant | rs10967272 |
|---|---|
| Chromosome Location | chr9:26255675-26255676 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10511768 | 0.84[EUR][1000 genomes] |
| rs10812375 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10812376 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10967234 | 0.83[EUR][1000 genomes] |
| rs10967236 | 0.84[EUR][1000 genomes] |
| rs10967237 | 0.84[EUR][1000 genomes] |
| rs10967238 | 0.84[EUR][1000 genomes] |
| rs10967249 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10967258 | 0.85[ASN][1000 genomes] |
| rs10967263 | 0.87[ASN][1000 genomes] |
| rs10967275 | 0.81[AMR][1000 genomes] |
| rs12378640 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12553446 | 0.81[AMR][1000 genomes] |
| rs12555624 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1434866 | 0.84[ASN][1000 genomes] |
| rs1865438 | 0.83[ASN][1000 genomes] |
| rs2082714 | 0.88[AMR][1000 genomes] |
| rs2099436 | 0.85[AMR][1000 genomes] |
| rs55670569 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62542520 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs62542521 | 0.88[AMR][1000 genomes] |
| rs62543080 | 0.81[AMR][1000 genomes] |
| rs62546059 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62547562 | 0.80[ASN][1000 genomes] |
| rs72714170 | 0.89[AMR][1000 genomes] |
| rs745223 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7470949 | 0.85[AMR][1000 genomes] |
| rs934523 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015883 | chr9:25633359-26315286 | Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv892844 | chr9:26062582-26298134 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv613927 | chr9:26153793-26284317 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv995049 | chr9:26162115-26760535 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv892849 | chr9:26225232-26284317 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1033265 | chr9:26242026-26425832 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:26249400-26256800 | Weak transcription | Hela-S3 | cervix |
