Variant report

Variant	rs10967236
Chromosome Location	chr9:26210786-26210787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10511768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10812370	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10812375	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10812376	0.89[EUR][1000 genomes]
rs10967234	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967235	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967237	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967238	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967249	0.88[EUR][1000 genomes]
rs10967272	0.84[EUR][1000 genomes]
rs12378640	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55670569	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs745223	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613927	chr9:26153793-26284317	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26209800-26211000	Enhancers	Fetal Lung	lung
2	chr9:26210000-26210800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:26210000-26210800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:26210000-26210800	Active TSS	Brain Substantia Nigra	brain
5	chr9:26210000-26210800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:26210000-26211000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:26210000-26211000	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr9:26210200-26210800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:26210200-26210800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:26210200-26210800	Active TSS	Brain Hippocampus Middle	brain
11	chr9:26210200-26210800	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr9:26210400-26210800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:26210400-26210800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:26210400-26210800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:26210400-26210800	Active TSS	Brain Cingulate Gyrus	brain
16	chr9:26210400-26210800	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:26210400-26211000	Flanking Active TSS	NHDF-Ad	bronchial
18	chr9:26210600-26211400	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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