Variant report

Variant	nsv892844
Chromosome Location	chr9:26062582-26298134
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:208730009..208732803-chr9:26161574..26164201,2	MCF-7	breast:
2	chr9:26237527..26239681-chr9:26241580..26243699,2	MCF-7	breast:
3	chr9:26237527..26239681-chr9:26241580..26243699,2	MCF-7	breast:

Extended variants
information (count: 6461 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:6461 , 50 per page) page: 1 2 3 4 5 6 7 ... 130

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9406901	chr9:26062582-26062583	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs531598478	chr9:26062620-26062621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs549852297	chr9:26062636-26062637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs568463257	chr9:26062642-26062643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114891944	chr9:26062663-26062664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs190050184	chr9:26062677-26062678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145976530	chr9:26062698-26062699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs540166393	chr9:26062708-26062709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs558488344	chr9:26062722-26062723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183210627	chr9:26062802-26062803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs16910121	chr9:26062842-26062843	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs556077550	chr9:26062845-26062846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556555670	chr9:26062846-26062847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs578139401	chr9:26062858-26062859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs188473116	chr9:26062873-26062874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541876093	chr9:26062897-26062898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs367778200	chr9:26062952-26062953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs559951475	chr9:26062962-26062963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs560564899	chr9:26062980-26062981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs545731545	chr9:26063040-26063041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs139795918	chr9:26063057-26063058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs34187881	chr9:26063080-26063081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192920801	chr9:26063089-26063090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs377011552	chr9:26063135-26063136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs185549834	chr9:26063172-26063173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs143203389	chr9:26063175-26063176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs542702966	chr9:26063239-26063240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75243066	chr9:26063257-26063258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs547887250	chr9:26063272-26063273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs61361053	chr9:26063296-26063297	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs540030509	chr9:26063310-26063311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs574078751	chr9:26063318-26063319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs542712264	chr9:26063347-26063348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs146750331	chr9:26063368-26063369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs537721303	chr9:26063409-26063410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370201191	chr9:26063434-26063435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs139225428	chr9:26063439-26063440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373126340	chr9:26063471-26063472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs76968918	chr9:26063475-26063476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs79261232	chr9:26063486-26063487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs112334956	chr9:26063509-26063510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187968542	chr9:26063561-26063562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs571767958	chr9:26063600-26063601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192597186	chr9:26063609-26063610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs563908023	chr9:26063622-26063623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs576270976	chr9:26063628-26063629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs543685306	chr9:26063632-26063633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561966410	chr9:26063641-26063642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs529287647	chr9:26063663-26063664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs547953830	chr9:26063700-26063701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:519 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26060800-26062600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:26061200-26062600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:26061600-26062600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:26062200-26062600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:26062400-26066000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:26062600-26064000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:26064000-26065600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:26065000-26066000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr9:26065600-26066400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:26066000-26066400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:26066400-26066600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:26079400-26080000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr9:26080000-26081200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:26081200-26082000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr9:26082000-26083600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:26083600-26084800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr9:26084800-26088400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:26086000-26086200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:26086200-26086400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:26086400-26086800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:26086800-26087200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:26088400-26088600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr9:26088400-26088800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:26088600-26093400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr9:26093400-26094000	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr9:26094000-26099800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr9:26099800-26101000	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr9:26100000-26100800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:26115400-26116200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:26115600-26116000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr9:26115800-26116200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:26115800-26116400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:26116000-26116400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:26116000-26116400	Enhancers	HMEC	breast
35	chr9:26118000-26118400	Enhancers	Adipose Nuclei	Adipose
36	chr9:26126600-26127200	Active TSS	Fetal Heart	heart
37	chr9:26127400-26128000	Weak transcription	NHDF-Ad	bronchial
38	chr9:26127600-26128000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:26127800-26130000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:26128000-26129200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:26128000-26130400	Enhancers	NHDF-Ad	bronchial
42	chr9:26128200-26129800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:26128800-26129800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr9:26129000-26129400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:26129200-26134200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:26129400-26129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:26129800-26130000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:26129800-26131600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:26129800-26131800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr9:26130000-26131400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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