Variant report

Variant	rs9406901
Chromosome Location	chr9:26062582-26062583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10967197	0.83[ASN][1000 genomes]
rs1332343	1.00[ASN][1000 genomes]
rs1332344	0.91[ASN][1000 genomes]
rs1332345	1.00[ASN][1000 genomes]
rs1332346	1.00[ASN][1000 genomes]
rs1343975	0.83[ASN][1000 genomes]
rs1412454	1.00[ASN][1000 genomes]
rs2013088	0.91[ASN][1000 genomes]
rs4978041	1.00[ASN][1000 genomes]
rs4978042	0.91[ASN][1000 genomes]
rs4978043	0.91[ASN][1000 genomes]
rs4978044	0.91[ASN][1000 genomes]
rs7019491	1.00[ASN][1000 genomes]
rs7025676	1.00[ASN][1000 genomes]
rs7036468	1.00[ASN][1000 genomes]
rs7854360	0.83[ASN][1000 genomes]
rs9298878	1.00[ASN][1000 genomes]
rs9298879	1.00[ASN][1000 genomes]
rs9298880	1.00[ASN][1000 genomes]
rs9406905	1.00[ASN][1000 genomes]
rs9408114	1.00[ASN][1000 genomes]
rs9919028	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892842	chr9:25954098-26102954	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv466324	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv613923	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1027629	chr9:26034116-26069178	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv892843	chr9:26035315-26078764	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9406901	GAS7	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26060800-26062600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:26061200-26062600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:26061600-26062600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:26062200-26062600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:26062400-26066000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links