Variant report
| Variant | rs9919028 |
|---|---|
| Chromosome Location | chr9:26092746-26092747 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10967197 | 0.83[ASN][1000 genomes] |
| rs1332343 | 1.00[ASN][1000 genomes] |
| rs1332344 | 0.91[ASN][1000 genomes] |
| rs1332345 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1332346 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1343975 | 0.83[ASN][1000 genomes] |
| rs1412454 | 1.00[ASN][1000 genomes] |
| rs2013088 | 0.91[ASN][1000 genomes] |
| rs2571521 | 0.81[AMR][1000 genomes] |
| rs4978041 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4978042 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4978043 | 0.91[ASN][1000 genomes] |
| rs4978044 | 0.91[ASN][1000 genomes] |
| rs7019491 | 1.00[ASN][1000 genomes] |
| rs7025676 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7036468 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7854360 | 0.83[ASN][1000 genomes] |
| rs9298878 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9298879 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9298880 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9406901 | 1.00[ASN][1000 genomes] |
| rs9406905 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9408114 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015883 | chr9:25633359-26315286 | Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv892842 | chr9:25954098-26102954 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv466324 | chr9:26005487-26112748 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv613923 | chr9:26005487-26112748 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv892844 | chr9:26062582-26298134 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:26088600-26093400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
