Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10967197	0.83[ASN][1000 genomes]
rs1332344	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1332345	1.00[ASN][1000 genomes]
rs1332346	1.00[ASN][1000 genomes]
rs1343975	0.83[ASN][1000 genomes]
rs1412454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013088	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4978041	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4978042	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4978043	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4978044	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7019491	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025676	1.00[ASN][1000 genomes]
rs7036468	1.00[ASN][1000 genomes]
rs7854360	0.83[ASN][1000 genomes]
rs9298878	1.00[ASN][1000 genomes]
rs9298879	1.00[ASN][1000 genomes]
rs9298880	1.00[ASN][1000 genomes]
rs9406901	1.00[ASN][1000 genomes]
rs9406905	1.00[ASN][1000 genomes]
rs9408114	1.00[ASN][1000 genomes]
rs9919028	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892842	chr9:25954098-26102954	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv466324	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv613923	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1027629	chr9:26034116-26069178	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv892843	chr9:26035315-26078764	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26058400-26062000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:26060200-26061400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:26060800-26062600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:26061000-26062000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:26061000-26062200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:26061200-26061600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:26061200-26062600	Enhancers	HUES48 Cell Line	embryonic stem cell

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