Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10511768	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10812370	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10812376	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10967234	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10967235	0.80[ASN][1000 genomes]
rs10967236	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10967237	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10967238	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10967249	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10967258	0.98[ASN][1000 genomes]
rs10967263	0.97[ASN][1000 genomes]
rs10967272	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12378640	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12555624	0.85[ASN][1000 genomes]
rs1434866	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1865438	0.96[ASN][1000 genomes]
rs55670569	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62542520	0.82[AMR][1000 genomes]
rs62546059	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62547562	0.82[ASN][1000 genomes]
rs72714170	0.82[AMR][1000 genomes]
rs745223	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs934523	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613927	chr9:26153793-26284317	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv892849	chr9:26225232-26284317	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv972302	chr9:26230724-26233548	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26228600-26237800	Weak transcription	HUVEC	blood vessel
2	chr9:26231800-26234400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:26232400-26234600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:26232400-26237400	Weak transcription	Fetal Brain Male	brain

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