Variant report

Variant	rs62542520
Chromosome Location	chr9:26263291-26263292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10511770	0.87[ASN][1000 genomes]
rs10812375	0.82[AMR][1000 genomes]
rs10812376	0.80[AMR][1000 genomes]
rs10967249	0.83[AMR][1000 genomes]
rs10967272	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10967275	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10967278	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10967280	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10967293	0.87[ASN][1000 genomes]
rs10967301	0.81[ASN][1000 genomes]
rs10967302	0.81[ASN][1000 genomes]
rs12378059	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12378060	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12378640	0.83[AMR][1000 genomes]
rs12553446	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12555624	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17776101	0.86[ASN][1000 genomes]
rs2082714	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2099436	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34581307	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs353433	0.86[ASN][1000 genomes]
rs55670569	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62542516	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62542519	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62542521	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62543079	0.87[ASN][1000 genomes]
rs62543080	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62543081	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72714170	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs745223	0.86[AMR][1000 genomes]
rs7470949	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613927	chr9:26153793-26284317	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv892849	chr9:26225232-26284317	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1033265	chr9:26242026-26425832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv869744	chr9:26256188-26435849	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv466325	chr9:26256782-26276773	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv613929	chr9:26256782-26276773	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv466326	chr9:26256782-26290977	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv613930	chr9:26256782-26290977	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv430012	chr9:26257238-26395900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv613931	chr9:26259926-26276773	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26260800-26264000	Enhancers	HUVEC	blood vessel
2	chr9:26262000-26267000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:26262000-26267800	Enhancers	Hela-S3	cervix
4	chr9:26262400-26263400	Enhancers	NHEK	skin
5	chr9:26262400-26265400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:26262400-26265400	Weak transcription	HSMMtube	muscle
7	chr9:26262800-26263400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:26262800-26264800	Weak transcription	HMEC	breast
9	chr9:26262800-26264800	Weak transcription	NH-A	brain
10	chr9:26262800-26265000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:26263000-26263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:26263000-26263400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:26263000-26264000	Weak transcription	NHDF-Ad	bronchial
14	chr9:26263000-26264800	Weak transcription	HSMM	muscle
15	chr9:26263200-26263400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:26263200-26263800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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