Variant report

Variant	rs62542519
Chromosome Location	chr9:26262140-26262141
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10511770	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10967258	0.81[AMR][1000 genomes]
rs10967275	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10967278	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10967280	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10967293	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10967301	0.81[ASN][1000 genomes]
rs10967302	0.81[ASN][1000 genomes]
rs12378059	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12378060	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12553446	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12555624	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17776101	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2082714	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2099436	0.89[ASN][1000 genomes]
rs34581307	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs353433	0.84[ASN][1000 genomes]
rs62542516	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62542520	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62542521	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62543079	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62543080	0.83[ASN][1000 genomes]
rs62543081	0.86[ASN][1000 genomes]
rs72714170	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7470949	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613927	chr9:26153793-26284317	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv892849	chr9:26225232-26284317	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1033265	chr9:26242026-26425832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv869744	chr9:26256188-26435849	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv466325	chr9:26256782-26276773	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv613929	chr9:26256782-26276773	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv466326	chr9:26256782-26290977	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv613930	chr9:26256782-26290977	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv430012	chr9:26257238-26395900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv613931	chr9:26259926-26276773	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26259200-26262800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:26259200-26262800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:26259200-26263200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:26259400-26262800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:26259400-26262800	Enhancers	HMEC	breast
6	chr9:26259800-26263000	Enhancers	NHDF-Ad	bronchial
7	chr9:26260400-26262400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:26260800-26264000	Enhancers	HUVEC	blood vessel
9	chr9:26261200-26262400	Enhancers	HSMMtube	muscle
10	chr9:26261200-26262400	Flanking Active TSS	NH-A	brain
11	chr9:26261400-26262400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr9:26261600-26262200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:26261600-26262400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:26261600-26262400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:26261800-26262200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:26261800-26262600	Active TSS	A549	lung
17	chr9:26261800-26262800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr9:26262000-26262200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:26262000-26262200	Enhancers	HSMM	muscle
20	chr9:26262000-26262200	Enhancers	NHEK	skin
21	chr9:26262000-26262400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:26262000-26267000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:26262000-26267800	Enhancers	Hela-S3	cervix

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