Variant report

Variant	nsv615987
Chromosome Location	chr9:139834195-139842262
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1138)
CpG islands
(count:1223)
Chromatin interactive
region (count:90)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1138 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:139839075-139839364	K562	blood:	n/a	n/a
2	ARID3A	chr9:139839043-139839584	HepG2	liver:	n/a	n/a
3	ATF1	chr9:139839002-139839680	K562	blood:	n/a	n/a
4	ATF2	chr9:139838950-139839618	GM12878	blood:	n/a	n/a
5	ATF2	chr9:139839036-139839575	GM12878	blood:	n/a	n/a
6	ATF3	chr9:139839047-139839690	A549	lung:	n/a	chr9:139839433-139839446
7	ATF3	chr9:139839063-139839401	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr9:139839043-139839521	A549	lung:	n/a	chr9:139839433-139839446
9	ATF3	chr9:139838643-139838833	K562	blood:	n/a	chr9:139838747-139838761 chr9:139838747-139838767
10	BACH1	chr9:139838954-139839457	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr9:139838461-139838708	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr9:139839195-139839667	K562	blood:	n/a	n/a
13	BCL3	chr9:139839061-139839649	A549	lung:	n/a	chr9:139839304-139839312 chr9:139839319-139839332
14	BCL3	chr9:139842227-139842820	A549	lung:	n/a	n/a
15	BCL3	chr9:139838187-139838758	A549	lung:	n/a	n/a
16	BCL3	chr9:139839056-139839675	A549	lung:	n/a	chr9:139839304-139839312 chr9:139839319-139839332
17	BCL3	chr9:139838825-139839336	GM12878	blood:	n/a	chr9:139838926-139838939 chr9:139839304-139839312 chr9:139839319-139839332
18	BCL3	chr9:139837806-139838756	A549	lung:	n/a	n/a
19	BCL3	chr9:139834267-139835144	A549	lung:	n/a	n/a
20	BCL3	chr9:139834393-139835045	A549	lung:	n/a	n/a
21	BCLAF1	chr9:139838402-139839433	GM12878	blood:	n/a	chr9:139838765-139838778 chr9:139838772-139838785 chr9:139838926-139838939 chr9:139839304-139839312 chr9:139839319-139839332
22	BCLAF1	chr9:139838954-139839506	GM12878	blood:	n/a	chr9:139839304-139839312 chr9:139839319-139839332
23	BHLHE40	chr9:139838637-139839625	K562	blood:	n/a	chr9:139838757-139838773 chr9:139838768-139838784
24	BHLHE40	chr9:139838624-139839532	GM12878	blood:	n/a	chr9:139838757-139838773 chr9:139838768-139838784
25	BHLHE40	chr9:139838735-139839795	HepG2	liver:	n/a	chr9:139838757-139838773 chr9:139838768-139838784
26	BRCA1	chr9:139839126-139839587	Hela-S3	cervix:	n/a	n/a
27	BRCA1	chr9:139839050-139839348	HepG2	liver:	n/a	n/a
28	BRCA1	chr9:139838505-139838723	Hela-S3	cervix:	n/a	n/a
29	CBX3	chr9:139839084-139839444	K562	blood:	n/a	n/a
30	CBX3	chr9:139839030-139839753	K562	blood:	n/a	n/a
31	CCNT2	chr9:139834994-139835152	K562	blood:	n/a	n/a
32	CCNT2	chr9:139838328-139839649	K562	blood:	n/a	chr9:139839440-139839460
33	CEBPB	chr9:139839265-139839550	K562	blood:	n/a	n/a
34	CEBPB	chr9:139838756-139839471	Hela-S3	cervix:	n/a	n/a
35	CEBPD	chr9:139838790-139839363	HepG2	liver:	n/a	n/a
36	CEBPD	chr9:139838995-139839199	HepG2	liver:	n/a	n/a
37	CHD1	chr9:139838638-139839565	GM12878	blood:	n/a	n/a
38	CHD1	chr9:139837678-139839685	IMR90	lung:	n/a	n/a
39	CHD1	chr9:139838421-139838594	H1-hESC	embryonic stem cell:	n/a	n/a
40	CHD1	chr9:139838018-139838037	GM12878	blood:	n/a	n/a
41	CHD2	chr9:139838304-139839575	Hela-S3	cervix:	n/a	n/a
42	CHD2	chr9:139839126-139839686	HepG2	liver:	n/a	n/a
43	CHD2	chr9:139838389-139839742	GM12878	blood:	n/a	n/a
44	CHD2	chr9:139838568-139838573	K562	blood:	n/a	n/a
45	CHD2	chr9:139837917-139838032	K562	blood:	n/a	n/a
46	CHD2	chr9:139839171-139839502	K562	blood:	n/a	n/a
47	CHD2	chr9:139839126-139839472	H1-hESC	embryonic stem cell:	n/a	n/a
48	CREB1	chr9:139838139-139839968	HepG2	liver:	n/a	n/a
49	CREB1	chr9:139838260-139839469	A549	lung:	n/a	n/a
50	CREB1	chr9:139838952-139839376	A549	lung:	n/a	n/a

(count:1223 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139835122-139835172	BJ	skin:	n/a
2	chr9:139838381-139838431	SK-N-MC	brain:	n/a
3	chr9:139840678-139840728	NT2-D1	testis:	n/a
4	chr9:139835122-139835172	BJ	skin:	n/a
5	chr9:139838381-139838431	SK-N-MC	brain:	n/a
6	chr9:139840678-139840728	NT2-D1	testis:	n/a
7	chr9:139840678-139840728	AG04449	skin:	fetal
8	chr9:139835353-139835403	NHBE	bronchial:	n/a
9	chr9:139836884-139836934	NT2-D1	testis:	n/a
10	chr9:139838358-139838408	SKMC	muscle:	n/a
11	chr9:139836884-139836934	PrEC	prostate:	n/a
12	chr9:139835353-139835403	AG10803	skin:	n/a
13	chr9:139838089-139838139	LNCaP	prostate:	n/a
14	chr9:139836323-139836373	IMR90	lung:	fetal
15	chr9:139835553-139835603	ECC-1	luminal epithelium:	n/a
16	chr9:139838358-139838408	GM12892	blood:	n/a
17	chr9:139836443-139836493	HL-60	blood:	n/a
18	chr9:139836443-139836493	NB4	blood:	n/a
19	chr9:139836978-139837028	HCT-116	colon:	n/a
20	chr9:139836443-139836493	U87	brain:	n/a
21	chr9:139838089-139838139	HepG2	liver:	n/a
22	chr9:139836994-139837044	H1-hESC	embryonic stem cell:	embryo
23	chr9:139836884-139836934	CMK	blood:	n/a
24	chr9:139836994-139837044	SK-N-SH_RA	brain:	n/a
25	chr9:139840432-139840482	SKMC	muscle:	n/a
26	chr9:139838358-139838408	Jurkat	blood:	n/a
27	chr9:139838381-139838431	PANC-1	pancreas:	n/a
28	chr9:139835353-139835403	Hela-S3	cervix:	n/a
29	chr9:139836978-139837028	BE2_C	brain:	n/a
30	chr9:139838358-139838408	Hepatocyte	liver:	n/a
31	chr9:139838089-139838139	PFSK-1	brain:	n/a
32	chr9:139840432-139840482	AG04450	lung:	fetal
33	chr9:139834199-139834249	NB4	blood:	n/a
34	chr9:139836994-139837044	HRPEpiC	eye:	n/a
35	chr9:139836323-139836373	HIPEpiC	eye:	n/a
36	chr9:139839439-139839489	HRCEpiC	kidney:	n/a
37	chr9:139835553-139835603	HUVEC	blood vessel:	n/a
38	chr9:139836884-139836934	T-47D	breast:	n/a
39	chr9:139839363-139839413	Hela-S3	cervix:	n/a
40	chr9:139835353-139835403	HUVEC	blood vessel:	n/a
41	chr9:139840432-139840482	HIPEpiC	eye:	n/a
42	chr9:139836978-139837028	HNPCEpiC	eye:	n/a
43	chr9:139839391-139839441	HNPCEpiC	eye:	n/a
44	chr9:139838518-139838568	Hela-S3	cervix:	n/a
45	chr9:139840678-139840728	HUVEC	blood vessel:	n/a
46	chr9:139839391-139839441	H1-hESC	embryonic stem cell:	embryo
47	chr9:139836323-139836373	NH-A	brain:	n/a
48	chr9:139837659-139837709	HCPEpiC	choroid plexus:	n/a
49	chr9:139836978-139837028	A549	lung:	n/a
50	chr9:139835553-139835603	PFSK-1	brain:	n/a

(count:90 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr9:139760778..139763207-chr9:139834767..139836838,2	K562	blood:
2	chr9:139778379..139782493-chr9:139835538..139841683,7	K562	blood:
3	chr9:139684566..139686323-chr9:139837681..139839181,2	K562	blood:
4	chr9:139836491..139840843-chr9:139920877..139924515,5	K562	blood:
5	chr9:139835735..139837348-chr9:139913162..139915924,2	K562	blood:
6	chr9:139838439..139841309-chr9:139947694..139949623,3	MCF-7	breast:
7	chr9:139750899..139754581-chr9:139837670..139840574,3	K562	blood:
8	chr9:139839168..139840906-chr9:139862731..139865227,2	MCF-7	breast:
9	chr9:139751242..139753857-chr9:139838389..139841093,3	MCF-7	breast:
10	chr9:139684995..139687739-chr9:139832629..139834715,2	MCF-7	breast:
11	chr9:139794855..139797359-chr9:139840971..139842625,2	MCF-7	breast:
12	chr9:139836429..139841703-chr9:139845168..139848601,5	K562	blood:
13	chr9:139777155..139782891-chr9:139837659..139842394,7	K562	blood:
14	chr9:139621075..139623507-chr9:139837293..139839645,2	K562	blood:
15	chr9:139780862..139783067-chr9:139834351..139836230,2	MCF-7	breast:
16	chr9:139780307..139780847-chr9:139838498..139839231,2	MCF-7	breast:
17	chr9:139790926..139800327-chr9:139835284..139840384,15	MCF-7	breast:
18	chr9:139760347..139763007-chr9:139836965..139839769,2	K562	blood:
19	chr9:139685045..139687775-chr9:139838528..139840680,3	MCF-7	breast:
20	chr9:139700428..139703391-chr9:139838721..139840265,2	K562	blood:
21	chr9:139775744..139785357-chr9:139834831..139843301,18	MCF-7	breast:
22	chr9:139837721..139840687-chr9:139929807..139932623,3	K562	blood:
23	chr9:139837779..139839326-chr9:139906684..139908515,2	MCF-7	breast:
24	chr9:139838060..139839792-chr9:139933494..139936101,2	K562	blood:
25	chr9:139836105..139846821-chr9:139919094..139924819,24	MCF-7	breast:
26	chr9:139841121..139842679-chr9:139886972..139888700,2	K562	blood:
27	chr9:139581042..139582796-chr9:139835753..139837526,2	K562	blood:
28	chr9:139842052..139843111-chr9:139922087..139923197,4	K562	blood:
29	chr9:139837657..139841229-chr9:139875890..139877651,3	MCF-7	breast:
30	chr9:139836972..139840310-chr9:139885072..139887174,4	K562	blood:
31	chr9:139837601..139839212-chr9:139939827..139944267,3	MCF-7	breast:
32	chr9:139752435..139755424-chr9:139833520..139835870,2	MCF-7	breast:
33	chr9:139840116..139841884-chr9:140115476..140117709,2	MCF-7	breast:
34	chr9:139741905..139745759-chr9:139836394..139841074,11	K562	blood:
35	chr9:139836453..139844148-chr9:139884945..139890988,15	K562	blood:
36	chr9:139701630..139703983-chr9:139840278..139843245,2	MCF-7	breast:
37	chr9:139835281..139842012-chr9:139842308..139848601,13	K562	blood:
38	chr9:139759084..139762257-chr9:139836822..139839684,5	MCF-7	breast:
39	chr9:139745090..139747396-chr9:139842193..139844576,2	K562	blood:
40	chr9:139834772..139837352-chr9:139938256..139940469,2	MCF-7	breast:
41	chr9:139701846..139704176-chr9:139836985..139838880,3	MCF-7	breast:
42	chr9:139792836..139799400-chr9:139842261..139846047,7	MCF-7	breast:
43	chr9:139728528..139730421-chr9:139837681..139839242,2	K562	blood:
44	chr9:139684892..139687578-chr9:139837356..139841601,5	MCF-7	breast:
45	chr9:139741905..139746962-chr9:139835280..139841074,9	K562	blood:
46	chr9:139837344..139842228-chr9:139920048..139923537,8	MCF-7	breast:
47	chr9:139836818..139839181-chr9:139906279..139908196,2	K562	blood:
48	chr9:139656219..139658957-chr9:139838927..139840752,2	K562	blood:
49	chr9:139836188..139848313-chr9:139883522..139894647,40	MCF-7	breast:
50	chr9:139734155..139746957-chr9:139834710..139842618,30	MCF-7	breast:

No data

Variant related genes	Relation type
LCN12	TF binding region
ENSG00000260190	TF binding region
FBXW5	TF binding region
C8G	TF binding region
LCN12	CpG island
ENSG00000260190	CpG island
FBXW5	CpG island
C8G	CpG island
ENSG00000273066	chromatin interactions
ENSG00000184709	chromatin interactions
ENSG00000176884	chromatin interactions
ENSG00000198454	chromatin interactions
ENSG00000188229	chromatin interactions
ENSG00000107223	chromatin interactions
ENSG00000244187	chromatin interactions
ENSG00000107331	chromatin interactions
ENSG00000127191	chromatin interactions
ENSG00000272679	chromatin interactions
ENSG00000263697	chromatin interactions
ENSG00000180549	chromatin interactions
ENSG00000177984	chromatin interactions
ENSG00000235117	chromatin interactions
ENSG00000107317	chromatin interactions
ENSG00000148362	chromatin interactions
ENSG00000232434	chromatin interactions
ENSG00000233016	chromatin interactions
ENSG00000184925	chromatin interactions
ENSG00000180539	chromatin interactions
ENSG00000199568	chromatin interactions
ENSG00000054179	chromatin interactions
ENSG00000169583	chromatin interactions
ENSG00000177943	chromatin interactions
ENSG00000212864	chromatin interactions
ENSG00000103260	chromatin interactions
ENSG00000266507	chromatin interactions
ENSG00000213213	chromatin interactions
ENSG00000196642	chromatin interactions
ENSG00000228544	chromatin interactions
ENSG00000107281	chromatin interactions
ENSG00000214402	chromatin interactions
ENSG00000054148	chromatin interactions
ENSG00000169692	chromatin interactions
ENSG00000272896	chromatin interactions

Extended variants
information (count: 783 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:783 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4880169	chr9:139834195-139834196	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs191181112	chr9:139834200-139834201	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
3	rs544458152	chr9:139834202-139834203	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
4	rs115904496	chr9:139834205-139834206	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
5	rs116197057	chr9:139834219-139834220	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
6	rs540738719	chr9:139834295-139834296	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
7	rs368252513	chr9:139834314-139834315	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
8	rs560607057	chr9:139834316-139834317	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
9	rs374541393	chr9:139834381-139834382	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
10	rs552523506	chr9:139834389-139834390	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
11	rs368355861	chr9:139834396-139834397	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
12	rs531927899	chr9:139834397-139834398	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
13	rs548445754	chr9:139834398-139834399	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
14	rs566927343	chr9:139834410-139834411	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
15	rs535807455	chr9:139834428-139834429	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
16	rs565363662	chr9:139834437-139834438	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
17	rs546180755	chr9:139834446-139834447	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
18	rs566280424	chr9:139834447-139834448	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
19	rs538708284	chr9:139834477-139834478	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
20	rs372387211	chr9:139834490-139834491	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
21	rs558485748	chr9:139834501-139834502	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
22	rs569002972	chr9:139834514-139834515	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
23	rs11145936	chr9:139834515-139834516	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs551336612	chr9:139834563-139834564	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
25	rs554862033	chr9:139834564-139834565	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
26	rs376942977	chr9:139834591-139834592	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
27	rs182262878	chr9:139834596-139834597	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
28	rs368020256	chr9:139834645-139834646	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
29	rs540677761	chr9:139834650-139834651	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
30	rs554186866	chr9:139834678-139834679	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
31	rs567916720	chr9:139834708-139834709	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
32	rs142051825	chr9:139834716-139834717	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs546244668	chr9:139834726-139834727	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs551586297	chr9:139834731-139834732	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs62580406	chr9:139834747-139834748	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs531887604	chr9:139834749-139834750	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
37	rs375909668	chr9:139834753-139834754	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
38	rs542129010	chr9:139834766-139834767	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
39	rs562086198	chr9:139834778-139834779	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
40	rs527978899	chr9:139834788-139834789	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
41	rs546220499	chr9:139834793-139834794	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
42	rs566426559	chr9:139834796-139834797	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
43	rs546989326	chr9:139834799-139834800	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
44	rs72761087	chr9:139834817-139834818	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
45	rs151332880	chr9:139834836-139834837	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
46	rs60742160	chr9:139834846-139834847	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs538077811	chr9:139834855-139834856	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
48	rs113874081	chr9:139834864-139834865	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
49	rs566931327	chr9:139834897-139834898	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
50	rs554800624	chr9:139834921-139834922	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17603634	CNVD
Oral cancer	21386901	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Melanoma	18172304	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Kleefstra Syndrome	21538692	CNVD
Disorders of sex development	22290220	CNVD
Cancer	21183584	CNVD
Chronic myelomonocytic leukemia	16760666	CNVD
Abnormal phenotypes	18644119	CNVD
Ovarian cancer	21720365	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Hepatocellular carcinoma	22174799	CNVD
Idiopathic chronic pancreatitis	21572526	CNVD
Kleefstra syndrome	22670141	CNVD
Schizophrenia	22241247	CNVD
9q deletion syndrome	16826528	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Non-small cell lung cancer	21829676	CNVD
Non-syndromic sensorineural hearing loss	19293338	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Mantle cell lymphoma	19029149	CNVD
Autism	20808228	CNVD
Epilepsy	22083797	CNVD
Cancer	20164920	CNVD
Breast cancer	21509527	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Autism	22495309	CNVD
Glioma	20126413	CNVD

Chromatin state (count:945 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139782200-139835800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:139782200-139837000	Weak transcription	Fetal Brain Male	brain
3	chr9:139797800-139837400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:139810400-139834400	Weak transcription	HSMM	muscle
5	chr9:139815000-139838200	Weak transcription	Fetal Kidney	kidney
6	chr9:139815400-139835000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:139815800-139837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:139816000-139835000	Weak transcription	Small Intestine	intestine
9	chr9:139817000-139834600	Weak transcription	HMEC	breast
10	chr9:139817000-139835000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:139817000-139838000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:139820800-139834400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:139821200-139835800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr9:139821400-139834200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:139821400-139834600	Weak transcription	Ovary	ovary
16	chr9:139822000-139834200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr9:139822000-139834400	Weak transcription	Brain Substantia Nigra	brain
18	chr9:139822400-139834200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:139822400-139834600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:139822600-139837200	Weak transcription	NH-A	brain
21	chr9:139822600-139837400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:139823000-139834600	Weak transcription	NHDF-Ad	bronchial
23	chr9:139823200-139834200	Weak transcription	Psoas Muscle	Psoas
24	chr9:139823200-139834400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:139823400-139834600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:139824200-139835600	Weak transcription	HUVEC	blood vessel
27	chr9:139825200-139837600	Weak transcription	HSMMtube	muscle
28	chr9:139829000-139834400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:139829400-139834600	Weak transcription	K562	blood
30	chr9:139830000-139837000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:139831000-139836600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr9:139831200-139837000	Strong transcription	Brain Germinal Matrix	brain
33	chr9:139831200-139837400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:139831600-139837200	Strong transcription	Fetal Intestine Small	intestine
35	chr9:139831600-139837200	Strong transcription	Fetal Thymus	thymus
36	chr9:139831600-139837400	Strong transcription	Fetal Brain Female	brain
37	chr9:139831800-139834200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr9:139831800-139834600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:139831800-139834800	Enhancers	Liver	Liver
40	chr9:139831800-139837000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:139831800-139837000	Strong transcription	Fetal Muscle Leg	muscle
42	chr9:139831800-139837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:139831800-139837200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:139831800-139837400	Strong transcription	Osteobl	bone
45	chr9:139832000-139834200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:139832000-139834200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:139832000-139835400	Genic enhancers	Adipose Nuclei	Adipose
48	chr9:139832000-139836600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:139832000-139837200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:139832200-139837200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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