Variant report

Variant	rs11145936
Chromosome Location	chr9:139834515-139834516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:65)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:65 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr9:139834511-139834733	K562	blood:	n/a	n/a
2	POLR2A	chr9:139833514-139835089	U87	brain:	n/a	n/a
3	POLR2A	chr9:139833359-139838737	SK-N-MC	brain:	n/a	n/a
4	POLR2A	chr9:139833343-139840280	K562	blood:	n/a	n/a
5	POLR2A	chr9:139834384-139834791	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr9:139834428-139834909	GM19193	blood:	n/a	n/a
7	MAX	chr9:139834365-139835206	A549	lung:	n/a	chr9:139834724-139834734
8	POLR2A	chr9:139833893-139834900	GM18505	blood:	n/a	n/a
9	POLR2A	chr9:139833668-139839561	HL-60	blood:	n/a	n/a
10	POLR2A	chr9:139834408-139834600	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr9:139833514-139837393	K562	blood:	n/a	n/a
12	POLR2A	chr9:139833763-139839430	A549	lung:	n/a	n/a
13	POLR2A	chr9:139834444-139834983	GM12878	blood:	n/a	n/a
14	POLR2A	chr9:139833576-139835020	GM12891	blood:	n/a	n/a
15	POLR2A	chr9:139834390-139834870	SK-N-SH	brain:	n/a	n/a
16	POLR2A	chr9:139834352-139834581	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr9:139834271-139834665	HCT-116	colon:	n/a	n/a
18	BCL3	chr9:139834267-139835144	A549	lung:	n/a	n/a
19	POLR2A	chr9:139834418-139834834	HepG2	liver:	n/a	n/a
20	POLR2A	chr9:139833430-139839515	K562	blood:	n/a	n/a
21	POLR2A	chr9:139833816-139836261	A549	lung:	n/a	n/a
22	POLR2A	chr9:139833833-139836283	A549	lung:	n/a	n/a
23	POLR2A	chr9:139834426-139835013	K562	blood:	n/a	n/a
24	TCF12	chr9:139834335-139835076	A549	lung:	n/a	n/a
25	POLR2A	chr9:139833575-139836827	HL-60	blood:	n/a	n/a
26	POLR2A	chr9:139833481-139835081	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr9:139834384-139834911	MCF-7	breast:	n/a	n/a
28	POLR2A	chr9:139833791-139836372	GM12878	blood:	n/a	n/a
29	POLR2A	chr9:139834379-139834686	HepG2	liver:	n/a	n/a
30	POLR2A	chr9:139833439-139835447	HepG2	liver:	n/a	n/a
31	BCL3	chr9:139834393-139835045	A549	lung:	n/a	n/a
32	POLR2A	chr9:139834208-139834968	GM12891	blood:	n/a	n/a
33	POLR2A	chr9:139833509-139836508	A549	lung:	n/a	n/a
34	POLR2A	chr9:139833594-139835651	GM12891	blood:	n/a	n/a
35	POLR2A	chr9:139834263-139835084	A549	lung:	n/a	n/a
36	POLR2A	chr9:139833549-139834865	GM12892	blood:	n/a	n/a
37	POLR2A	chr9:139834484-139834964	HepG2	liver:	n/a	n/a
38	POLR2A	chr9:139833518-139835681	MCF-7	breast:	n/a	n/a
39	POLR2A	chr9:139833485-139839342	GM12878	blood:	n/a	n/a
40	JUND	chr9:139834380-139835546	A549	lung:	n/a	n/a
41	POLR2A	chr9:139833705-139835774	PFSK-1	brain:	n/a	n/a
42	POLR2A	chr9:139833937-139834938	K562	blood:	n/a	n/a
43	POLR2A	chr9:139833838-139835109	Hela-S3	cervix:	n/a	n/a
44	POLR2A	chr9:139834344-139834969	HCT-116	colon:	n/a	n/a
45	POLR2A	chr9:139834481-139834516	ProgFib	skin:	n/a	n/a
46	POLR2A	chr9:139833501-139835566	PANC-1	pancreas:	n/a	n/a
47	POLR2A	chr9:139833819-139836025	Hela-S3	cervix:	n/a	n/a
48	POLR2A	chr9:139834281-139834957	GM12878	blood:	n/a	n/a
49	POLR2A	chr9:139833327-139836813	PANC-1	pancreas:	n/a	n/a
50	POLR2A	chr9:139833603-139836347	GM12892	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139741779..139744858-chr9:139831668..139834703,3	MCF-7	breast:
2	chr9:139684995..139687739-chr9:139832629..139834715,2	MCF-7	breast:
3	chr9:139833070..139835457-chr9:139886709..139888900,2	MCF-7	breast:
4	chr9:139738593..139754524-chr9:139832961..139844322,29	MCF-7	breast:
5	chr9:139833776..139836708-chr9:139890446..139893383,3	K562	blood:
6	chr9:139780862..139783067-chr9:139834351..139836230,2	MCF-7	breast:
7	chr9:139737965..139740810-chr9:139834289..139836392,2	K562	blood:
8	chr9:139752435..139755424-chr9:139833520..139835870,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260190	TF binding region
ENSG00000232434	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000266507	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000054148	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11788087	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
10	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
11	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
12	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
13	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
14	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
15	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
16	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
17	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
18	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
19	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
20	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
21	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
22	esv1846327	chr9:139690144-139841512	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	86 gene(s)	inside rSNPs	diseases
23	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
24	nsv894468	chr9:139693992-139860264	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
25	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
26	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
27	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
28	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
29	nsv894482	chr9:139709976-139860264	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	78 gene(s)	inside rSNPs	diseases
30	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
31	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
32	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
33	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
34	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
35	nsv1047479	chr9:139754184-139869440	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
36	nsv540353	chr9:139754184-139869440	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
37	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
38	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
39	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
40	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
41	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
42	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
43	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
44	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
45	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
46	esv997310	chr9:139831296-139837698	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
47	nsv894504	chr9:139831696-139844151	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
48	nsv894505	chr9:139831696-139848717	Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
49	nsv615987	chr9:139834195-139842262	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
50	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139782200-139835800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:139782200-139837000	Weak transcription	Fetal Brain Male	brain
3	chr9:139797800-139837400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:139815000-139838200	Weak transcription	Fetal Kidney	kidney
5	chr9:139815400-139835000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:139815800-139837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:139816000-139835000	Weak transcription	Small Intestine	intestine
8	chr9:139817000-139834600	Weak transcription	HMEC	breast
9	chr9:139817000-139835000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr9:139817000-139838000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:139821200-139835800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:139821400-139834600	Weak transcription	Ovary	ovary
13	chr9:139822400-139834600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:139822600-139837200	Weak transcription	NH-A	brain
15	chr9:139822600-139837400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:139823000-139834600	Weak transcription	NHDF-Ad	bronchial
17	chr9:139823400-139834600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:139824200-139835600	Weak transcription	HUVEC	blood vessel
19	chr9:139825200-139837600	Weak transcription	HSMMtube	muscle
20	chr9:139829400-139834600	Weak transcription	K562	blood
21	chr9:139830000-139837000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:139831000-139836600	Strong transcription	Stomach Smooth Muscle	stomach
23	chr9:139831200-139837000	Strong transcription	Brain Germinal Matrix	brain
24	chr9:139831200-139837400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:139831600-139837200	Strong transcription	Fetal Intestine Small	intestine
26	chr9:139831600-139837200	Strong transcription	Fetal Thymus	thymus
27	chr9:139831600-139837400	Strong transcription	Fetal Brain Female	brain
28	chr9:139831800-139834600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:139831800-139834800	Enhancers	Liver	Liver
30	chr9:139831800-139837000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:139831800-139837000	Strong transcription	Fetal Muscle Leg	muscle
32	chr9:139831800-139837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:139831800-139837200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr9:139831800-139837400	Strong transcription	Osteobl	bone
35	chr9:139832000-139835400	Genic enhancers	Adipose Nuclei	Adipose
36	chr9:139832000-139836600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:139832000-139837200	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr9:139832200-139837200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:139832200-139837600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:139832400-139836400	Strong transcription	Thymus	Thymus
41	chr9:139832400-139837200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr9:139832400-139837600	Strong transcription	Fetal Lung	lung
43	chr9:139832600-139837400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr9:139832800-139837400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:139833200-139837000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:139833400-139836000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:139833400-139836000	Strong transcription	Esophagus	oesophagus
48	chr9:139833400-139836600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:139833400-139836800	Strong transcription	Placenta	Placenta
50	chr9:139833400-139837400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links