Variant report

Variant	nsv7498
Chromosome Location	chr10:96857894-96881940
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 450 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:450 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539603619	chr10:96857908-96857909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs564224940	chr10:96857959-96857960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs577828311	chr10:96858004-96858005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs540145360	chr10:96858008-96858009	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs560140037	chr10:96858074-96858075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs199910954	chr10:96858110-96858111	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs566185021	chr10:96858133-96858134	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs144228482	chr10:96858137-96858138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs534674957	chr10:96858139-96858140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs558165900	chr10:96858154-96858155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs545020194	chr10:96869045-96869046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs187873898	chr10:96869063-96869064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs548238697	chr10:96869067-96869068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs192488484	chr10:96869098-96869099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs2860995	chr10:96869124-96869125	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs540780850	chr10:96869219-96869220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs576609028	chr10:96869238-96869239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs553514536	chr10:96869243-96869244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs527367037	chr10:96869255-96869256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs182337856	chr10:96869283-96869284	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs187466274	chr10:96869341-96869342	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs528079407	chr10:96869412-96869413	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs192919224	chr10:96869521-96869522	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs80344270	chr10:96869552-96869553	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs561525109	chr10:96869570-96869571	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs12262763	chr10:96869581-96869582	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs10882538	chr10:96869584-96869585	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs550388090	chr10:96869606-96869607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs184637830	chr10:96869616-96869617	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs190298914	chr10:96869641-96869642	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs552909858	chr10:96869642-96869643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs566338185	chr10:96869663-96869664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs192293661	chr10:96869679-96869680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs184444653	chr10:96869744-96869745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs374333654	chr10:96869746-96869747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs189632501	chr10:96869801-96869802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs537583550	chr10:96869841-96869842	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs560844035	chr10:96869901-96869902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs181891970	chr10:96869926-96869927	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs545547400	chr10:96869941-96869942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs1854030	chr10:96869943-96869944	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs372326457	chr10:96869971-96869972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs572840781	chr10:96870100-96870101	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs541738061	chr10:96870102-96870103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs561759179	chr10:96870159-96870160	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs113166575	chr10:96870261-96870262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs544317950	chr10:96870273-96870274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs59485845	chr10:96870316-96870317	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs561401825	chr10:96870350-96870351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs4119640	chr10:96870370-96870371	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96856000-96858200	Enhancers	HepG2	liver
2	chr10:96857200-96858000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr10:96857200-96858200	Enhancers	Fetal Intestine Small	intestine
4	chr10:96857200-96858200	Enhancers	Stomach Mucosa	stomach
5	chr10:96857400-96858000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:96857400-96858200	Enhancers	Liver	Liver
7	chr10:96857600-96858200	Enhancers	Fetal Intestine Large	intestine
8	chr10:96869000-96871600	Enhancers	HepG2	liver
9	chr10:96871600-96876200	Weak transcription	HepG2	liver
10	chr10:96874800-96875200	Enhancers	Liver	Liver
11	chr10:96875200-96876200	Flanking Active TSS	Liver	Liver
12	chr10:96876200-96876600	Enhancers	Liver	Liver
13	chr10:96876200-96877400	Enhancers	HepG2	liver
14	chr10:96876600-96876800	Flanking Active TSS	Liver	Liver
15	chr10:96876800-96877000	Enhancers	Liver	Liver
16	chr10:96877000-96877400	Flanking Active TSS	Liver	Liver
17	chr10:96877400-96878000	Enhancers	Liver	Liver
18	chr10:96877400-96881000	Weak transcription	HepG2	liver
19	chr10:96878000-96880600	Weak transcription	Liver	Liver
20	chr10:96879200-96879800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:96879200-96879800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:96880600-96881400	Enhancers	Liver	Liver
23	chr10:96881000-96883400	Enhancers	HepG2	liver
24	chr10:96881200-96881600	Active TSS	Fetal Heart	heart
25	chr10:96881400-96881800	Flanking Active TSS	Liver	Liver
26	chr10:96881400-96882400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:96881400-96882400	Enhancers	Duodenum Mucosa	Duodenum
28	chr10:96881400-96882400	Enhancers	Gastric	stomach
29	chr10:96881400-96882400	Enhancers	Pancreas	Pancrea
30	chr10:96881600-96883400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:96881600-96883400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:96881800-96882000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr10:96881800-96882200	Enhancers	HSMMtube	muscle
34	chr10:96881800-96882400	Enhancers	Fetal Stomach	stomach
35	chr10:96881800-96882600	Enhancers	Liver	Liver

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