Variant report

Variant	rs10882538
Chromosome Location	chr10:96869584-96869585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10786187	0.81[EUR][1000 genomes]
rs10786189	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10786190	0.86[EUR][1000 genomes]
rs10882540	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882543	0.86[EUR][1000 genomes]
rs10882544	0.81[EUR][1000 genomes]
rs10882546	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188189	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188190	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188192	0.85[EUR][1000 genomes]
rs11188196	0.86[EUR][1000 genomes]
rs11188197	0.86[EUR][1000 genomes]
rs11188200	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12261370	0.86[EUR][1000 genomes]
rs12769577	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12782731	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1575930	0.86[EUR][1000 genomes]
rs1854029	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1854030	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2449809	0.84[EUR][1000 genomes]
rs2449810	0.86[EUR][1000 genomes]
rs2478478	0.84[EUR][1000 genomes]
rs2478479	0.84[EUR][1000 genomes]
rs2901829	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4119640	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4532969	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs585381	0.84[EUR][1000 genomes]
rs591157	0.82[EUR][1000 genomes]
rs593207	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs594402	0.86[EUR][1000 genomes]
rs604022	0.82[EUR][1000 genomes]
rs604373	0.82[EUR][1000 genomes]
rs610046	0.82[EUR][1000 genomes]
rs611416	0.82[EUR][1000 genomes]
rs613340	0.82[EUR][1000 genomes]
rs614682	0.81[EUR][1000 genomes]
rs620196	0.82[EUR][1000 genomes]
rs626415	0.82[EUR][1000 genomes]
rs632113	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs634269	0.82[EUR][1000 genomes]
rs637724	0.82[EUR][1000 genomes]
rs638895	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs641198	0.82[EUR][1000 genomes]
rs644437	0.86[EUR][1000 genomes]
rs646845	0.82[EUR][1000 genomes]
rs648638	0.82[EUR][1000 genomes]
rs6583979	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583980	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs663473	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs666679	0.85[EUR][1000 genomes]
rs666786	0.84[EUR][1000 genomes]
rs672428	0.82[EUR][1000 genomes]
rs672860	0.82[EUR][1000 genomes]
rs675332	0.86[EUR][1000 genomes]
rs678165	0.85[EUR][1000 genomes]
rs679025	0.86[EUR][1000 genomes]
rs680918	0.86[EUR][1000 genomes]
rs682477	0.85[EUR][1000 genomes]
rs7072133	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7079861	0.86[EUR][1000 genomes]
rs7082502	0.86[EUR][1000 genomes]
rs7087492	0.83[EUR][1000 genomes]
rs7087618	0.86[EUR][1000 genomes]
rs7089303	0.82[EUR][1000 genomes]
rs7094658	0.86[EUR][1000 genomes]
rs752415	0.83[EUR][1000 genomes]
rs752416	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7907627	0.86[EUR][1000 genomes]
rs7907827	0.86[EUR][1000 genomes]
rs7921561	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs815265	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs815266	0.84[EUR][1000 genomes]
rs815268	0.83[EUR][1000 genomes]
rs815269	0.84[EUR][1000 genomes]
rs815270	0.83[EUR][1000 genomes]
rs943313	0.84[EUR][1000 genomes]
rs943315	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1041915	chr10:96851448-96869694	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv1043378	chr10:96855366-96876009	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1046796	chr10:96857760-96869694	Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv1040288	chr10:96857760-96876077	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv1040270	chr10:96857760-96882502	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv7498	chr10:96857894-96881940	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv1054199	chr10:96861570-96875702	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1035517	chr10:96861570-96876009	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv551965	chr10:96864805-96872102	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv551966	chr10:96864805-96874416	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv437691	chr10:96864805-96876696	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv15617	chr10:96864858-96874954	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv1800453	chr10:96865081-96869694	Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv1815404	chr10:96865081-96869694	Enhancers	n/a	n/a	inside rSNPs	diseases
18	nsv1049012	chr10:96865081-96875947	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv1051425	chr10:96865081-96875963	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv1792985	chr10:96865081-96876077	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv1813761	chr10:96865081-96876077	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	esv1828293	chr10:96865081-96876077	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv1839838	chr10:96865081-96876077	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
24	nsv1051877	chr10:96865081-96876077	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv1042421	chr10:96865081-96882502	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
26	nsv1046150	chr10:96865081-96885334	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
27	esv1837238	chr10:96865093-96876089	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
28	nsv1041130	chr10:96865172-96882502	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
29	nsv1037640	chr10:96865196-96876077	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
30	nsv436103	chr10:96866651-96875162	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv3316352	chr10:96867106-96875021	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	esv3316363	chr10:96867179-96874947	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
33	nsv498738	chr10:96867192-96874943	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
34	esv3316374	chr10:96867193-96874943	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv3318407	chr10:96869162-96873660	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv3318419	chr10:96869162-96873660	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96869000-96871600	Enhancers	HepG2	liver

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