Variant report
| Variant | nsv1046796 |
|---|---|
| Chromosome Location | chr10:96857760-96869694 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs150683166 | chr10:96857792-96857793 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs377624557 | chr10:96857795-96857796 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs150713410 | chr10:96857825-96857826 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs568935508 | chr10:96857832-96857833 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs539603619 | chr10:96857908-96857909 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs564224940 | chr10:96857959-96857960 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs577828311 | chr10:96858004-96858005 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs540145360 | chr10:96858008-96858009 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs560140037 | chr10:96858074-96858075 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs199910954 | chr10:96858110-96858111 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs566185021 | chr10:96858133-96858134 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs144228482 | chr10:96858137-96858138 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs534674957 | chr10:96858139-96858140 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs558165900 | chr10:96858154-96858155 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs545020194 | chr10:96869045-96869046 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs187873898 | chr10:96869063-96869064 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs548238697 | chr10:96869067-96869068 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs192488484 | chr10:96869098-96869099 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs2860995 | chr10:96869124-96869125 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 20 | rs540780850 | chr10:96869219-96869220 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs576609028 | chr10:96869238-96869239 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs553514536 | chr10:96869243-96869244 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs527367037 | chr10:96869255-96869256 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs182337856 | chr10:96869283-96869284 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs187466274 | chr10:96869341-96869342 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs528079407 | chr10:96869412-96869413 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs192919224 | chr10:96869521-96869522 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs80344270 | chr10:96869552-96869553 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs561525109 | chr10:96869570-96869571 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs12262763 | chr10:96869581-96869582 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs10882538 | chr10:96869584-96869585 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 32 | rs550388090 | chr10:96869606-96869607 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs184637830 | chr10:96869616-96869617 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs190298914 | chr10:96869641-96869642 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs552909858 | chr10:96869642-96869643 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 36 | rs566338185 | chr10:96869663-96869664 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs192293661 | chr10:96869679-96869680 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:71)
| Disease | PMID | Source |
|---|---|---|
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Cockayne syndrome | 18421352 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Glioma | 21971842 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Usher syndrome | 20538994 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Submicroscopic aberration syndrome | 21292638 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Colorectal cancer | 18645599 | CNVD |
| Polyposis syndrome | 18645599 | CNVD |
| Prostate cancer | 17245344 | CNVD |
| Glioblastoma multiforme | 17369134 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Breast cancer | 22032731 | CNVD |
| Ovarian cancer | 20844748 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Breast cancer | 21364760 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Chronic lymphocytic leukemia | 21049055 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Melanoma | 24453001 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
| Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:96856000-96858200 | Enhancers | HepG2 | liver |
| 2 | chr10:96857200-96858000 | Enhancers | Pancreatic Islets | Pancreatic Islet |
| 3 | chr10:96857200-96858200 | Enhancers | Fetal Intestine Small | intestine |
| 4 | chr10:96857200-96858200 | Enhancers | Stomach Mucosa | stomach |
| 5 | chr10:96857400-96858000 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 6 | chr10:96857400-96858200 | Enhancers | Liver | Liver |
| 7 | chr10:96857600-96857800 | Enhancers | Gastric | stomach |
| 8 | chr10:96857600-96858200 | Enhancers | Fetal Intestine Large | intestine |
| 9 | chr10:96869000-96871600 | Enhancers | HepG2 | liver |
