Variant report

Variant	rs377624557
Chromosome Location	chr10:96857795-96857796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv467436	chr10:96805371-96862286	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv551964	chr10:96805371-96862286	ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	esv1847869	chr10:96848203-96864595	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1043332	chr10:96851448-96865289	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv1040153	chr10:96851448-96869051	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1041915	chr10:96851448-96869694	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv1048003	chr10:96853813-96865289	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1042615	chr10:96855366-96869094	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1043378	chr10:96855366-96876009	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1038986	chr10:96857760-96869065	Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv1039124	chr10:96857760-96869094	Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv1046796	chr10:96857760-96869694	Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv1040288	chr10:96857760-96876077	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
17	nsv1040270	chr10:96857760-96882502	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96856000-96858200	Enhancers	HepG2	liver
2	chr10:96857200-96858000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr10:96857200-96858200	Enhancers	Fetal Intestine Small	intestine
4	chr10:96857200-96858200	Enhancers	Stomach Mucosa	stomach
5	chr10:96857400-96858000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:96857400-96858200	Enhancers	Liver	Liver
7	chr10:96857600-96857800	Enhancers	Gastric	stomach
8	chr10:96857600-96858200	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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