Variant report

Variant	nsv7953
Chromosome Location	chr6:109885153-109893563
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 317 )
Associated
traits (count: 114 )

Variant overlapped rSNPs/rCNVs (count:317 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572331654	chr6:109885167-109885168	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs149691623	chr6:109885168-109885169	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111445312	chr6:109885173-109885174	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544786986	chr6:109885247-109885248	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543828088	chr6:109885292-109885293	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560777833	chr6:109885363-109885364	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs117513176	chr6:109885396-109885397	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201166033	chr6:109885417-109885418	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs371990680	chr6:109885431-109885432	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs559897810	chr6:109885434-109885435	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs528722340	chr6:109885439-109885440	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375094114	chr6:109885466-109885467	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10499052	chr6:109885475-109885476	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs7753224	chr6:109885479-109885480	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs530896454	chr6:109885535-109885536	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs550954664	chr6:109885595-109885596	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs11752791	chr6:109885646-109885647	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs536741499	chr6:109885654-109885655	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs145534037	chr6:109885735-109885736	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs566643957	chr6:109885759-109885760	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143388371	chr6:109885780-109885781	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs367615932	chr6:109885781-109885782	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs562415466	chr6:109885790-109885791	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558404376	chr6:109885869-109885870	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs544580452	chr6:109885915-109885916	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs562360385	chr6:109885937-109885938	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376701100	chr6:109885942-109885943	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs568816940	chr6:109885979-109885980	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs114500582	chr6:109886001-109886002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs7757895	chr6:109886005-109886006	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs574398909	chr6:109886018-109886019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540299423	chr6:109886034-109886035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs553617036	chr6:109886064-109886065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs148865857	chr6:109886118-109886119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs10872047	chr6:109886159-109886160	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs374145517	chr6:109886190-109886191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184408323	chr6:109886194-109886195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531239301	chr6:109886210-109886211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189558069	chr6:109886216-109886217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs114184417	chr6:109886217-109886218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs530073674	chr6:109886298-109886299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547037693	chr6:109886331-109886332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs573016356	chr6:109886358-109886359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181781741	chr6:109886434-109886435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532129812	chr6:109886478-109886479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372195910	chr6:109886483-109886484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs551963934	chr6:109886487-109886488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549449929	chr6:109886516-109886517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368465671	chr6:109886517-109886518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs568753899	chr6:109886523-109886524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:114)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Basal cell lymphoma	17170743	CNVD
Prostate cancer	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Autism	17483303	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
abnormal development	18461090	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Systemic lupus erythematosus	19220326	CNVD
Cancer	17160897	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Acute lymphoblastic leukemia	17229543	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Mental retardation	17621639	CNVD
Intellectual disability	22102821	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109867000-109885800	Weak transcription	Ovary	ovary
2	chr6:109878400-109886200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:109878800-109894000	Weak transcription	Pancreas	Pancrea
4	chr6:109878800-109903600	Weak transcription	Psoas Muscle	Psoas
5	chr6:109879000-109903800	Weak transcription	Thymus	Thymus
6	chr6:109879000-109906000	Weak transcription	Left Ventricle	heart
7	chr6:109879000-109917400	Weak transcription	Aorta	Aorta
8	chr6:109879400-109893400	Weak transcription	Primary T cells from cord blood	blood
9	chr6:109879600-109886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:109879800-109900600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:109880800-109900000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:109881000-109900000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:109881200-109902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:109883400-109886200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:109884000-109885200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:109884000-109885600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:109884000-109886200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:109885000-109886000	Strong transcription	Primary B cells from cord blood	blood
19	chr6:109885000-109886600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:109885000-109902400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:109885200-109900200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:109885600-109887800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:109886000-109910600	Weak transcription	Primary B cells from cord blood	blood
24	chr6:109893400-109894800	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links