Variant report

Variant	rs148865857
Chromosome Location	chr6:109886118-109886119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv7953	chr6:109885153-109893563	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109878400-109886200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:109878800-109894000	Weak transcription	Pancreas	Pancrea
3	chr6:109878800-109903600	Weak transcription	Psoas Muscle	Psoas
4	chr6:109879000-109903800	Weak transcription	Thymus	Thymus
5	chr6:109879000-109906000	Weak transcription	Left Ventricle	heart
6	chr6:109879000-109917400	Weak transcription	Aorta	Aorta
7	chr6:109879400-109893400	Weak transcription	Primary T cells from cord blood	blood
8	chr6:109879600-109886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:109879800-109900600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:109880800-109900000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:109881000-109900000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:109881200-109902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:109883400-109886200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:109884000-109886200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:109885000-109886600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:109885000-109902400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:109885200-109900200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:109885600-109887800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:109886000-109910600	Weak transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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