Variant report

Variant	nsv818709
Chromosome Location	chr9:85372904-85377227
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 170 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:170 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2889952	chr9:85372904-85372905	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs144092311	chr9:85372907-85372908	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs561302394	chr9:85372922-85372923	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs17085770	chr9:85372925-85372926	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs182126321	chr9:85372928-85372929	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs147333303	chr9:85372969-85372970	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs2378642	chr9:85372971-85372972	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs569683883	chr9:85373028-85373029	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs374718346	chr9:85373034-85373035	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs11139750	chr9:85373051-85373052	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs187212294	chr9:85373084-85373085	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs189128348	chr9:85373092-85373093	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs138952946	chr9:85373116-85373117	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs112746640	chr9:85373187-85373188	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs181505745	chr9:85373203-85373204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113234980	chr9:85373233-85373234	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544917795	chr9:85373327-85373328	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs2378643	chr9:85373362-85373363	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs576640029	chr9:85373386-85373387	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs148627605	chr9:85373387-85373388	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs111331270	chr9:85373403-85373404	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs73477951	chr9:85373474-85373475	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs79975650	chr9:85373543-85373544	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs559836507	chr9:85373546-85373547	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs10867874	chr9:85373578-85373579	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs551714100	chr9:85373597-85373598	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs535336779	chr9:85373607-85373608	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141227086	chr9:85373647-85373648	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs568005573	chr9:85373688-85373689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs10867875	chr9:85373689-85373690	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs28756037	chr9:85373725-85373726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs67844009	chr9:85373726-85373727	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs569534722	chr9:85373747-85373748	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566976592	chr9:85373749-85373750	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs534367689	chr9:85373767-85373768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs546569555	chr9:85373780-85373781	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11139751	chr9:85373786-85373787	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs146242524	chr9:85373809-85373810	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs539774317	chr9:85373847-85373848	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11139752	chr9:85373848-85373849	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs573090782	chr9:85373882-85373883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs575518606	chr9:85373911-85373912	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs535078539	chr9:85373912-85373913	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs139337940	chr9:85373914-85373915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs555941008	chr9:85373943-85373944	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs369657578	chr9:85373948-85373949	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs144142782	chr9:85373975-85373976	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs541101283	chr9:85374000-85374001	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559677582	chr9:85374012-85374013	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs577929645	chr9:85374015-85374016	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Urothelial cell carcinoma	18451213	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Renal cell carcinoma	18765545	CNVD
Astrocytoma	22246337	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85372200-85376200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr9:85372400-85373000	Enhancers	Fetal Thymus	thymus
3	chr9:85372400-85376400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr9:85372800-85377400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:85372800-85377600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:85373000-85373400	Weak transcription	Fetal Thymus	thymus
7	chr9:85373400-85373600	Enhancers	Fetal Thymus	thymus
8	chr9:85373600-85375600	Weak transcription	Fetal Thymus	thymus
9	chr9:85374400-85391000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:85375600-85376400	Enhancers	Dnd41	blood
11	chr9:85375600-85378200	Enhancers	Thymus	Thymus
12	chr9:85375600-85379600	Enhancers	Fetal Thymus	thymus
13	chr9:85376200-85378600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:85376400-85378600	Weak transcription	Dnd41	blood
15	chr9:85376400-85379600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:85377000-85377200	Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr9:85377000-85380600	Enhancers	Primary hematopoietic stem cells	blood
18	chr9:85377200-85377400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr9:85377200-85377600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:85377200-85377800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:85377200-85378000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr9:85377200-85381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:85377200-85381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links