Variant report

Variant	rs17085770
Chromosome Location	chr9:85372925-85372926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1005991	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11139735	0.95[AFR][1000 genomes]
rs2208612	1.00[AMR][1000 genomes]
rs7029171	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7033047	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477963	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477966	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477983	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479936	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479943	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479969	1.00[AMR][1000 genomes]
rs73479971	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479983	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482047	1.00[AMR][1000 genomes]
rs7864468	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7867099	0.84[AFR][1000 genomes]
rs7868662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870881	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7871261	1.00[AMR][1000 genomes]
rs7872385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv515920	chr9:85372904-85377227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv818709	chr9:85372904-85377227	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85372200-85376200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr9:85372400-85373000	Enhancers	Fetal Thymus	thymus
3	chr9:85372400-85376400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr9:85372800-85377400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:85372800-85377600	Weak transcription	H9 Cell Line	embryonic stem cell

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