Variant report

Variant	rs73479936
Chromosome Location	chr9:85398992-85398993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85389992..85391848-chr9:85397163..85400021,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1005991	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11139735	0.86[AFR][1000 genomes]
rs17085770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2208612	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7029171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7033047	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477951	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477963	1.00[AMR][1000 genomes]
rs73477966	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477983	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479934	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479969	1.00[AMR][1000 genomes]
rs73479971	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482047	1.00[AMR][1000 genomes]
rs7864468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868662	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870881	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7871261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7872385	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv518664	chr9:85391686-85399923	Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85390800-85400600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr9:85391600-85404000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:85393400-85403800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:85395400-85401400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:85395400-85424800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:85397800-85399400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:85398400-85400400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:85398800-85399000	Enhancers	Rectal Mucosa Donor 29	rectum

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