Variant report

Variant	rs7033047
Chromosome Location	chr9:85422257-85422258
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1005991	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17085770	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2208612	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7029171	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477951	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477963	1.00[AMR][1000 genomes]
rs73477966	1.00[AMR][1000 genomes]
rs73477983	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479910	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479934	1.00[AMR][1000 genomes]
rs73479936	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479943	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479969	1.00[AMR][1000 genomes]
rs73479971	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482047	1.00[AMR][1000 genomes]
rs7864468	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870881	1.00[AMR][1000 genomes]
rs7871261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7872385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85395400-85424800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85416400-85422400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:85418400-85422800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:85418600-85422600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:85418600-85422800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:85420400-85422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:85421800-85423000	Enhancers	Dnd41	blood
8	chr9:85422200-85423200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:85422200-85424000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:85422200-85427200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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