Variant report

Variant	rs7868662
Chromosome Location	chr9:85415209-85415210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1005991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11139735	0.82[AFR][1000 genomes]
rs17085770	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2208612	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7029171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7033047	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477951	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477963	1.00[AMR][1000 genomes]
rs73477966	1.00[AMR][1000 genomes]
rs73477983	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479910	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479934	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479969	1.00[AMR][1000 genomes]
rs73479971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482047	1.00[AMR][1000 genomes]
rs7864468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7870881	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7871261	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7872385	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85395400-85424800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85404600-85420400	Weak transcription	Gastric	stomach
3	chr9:85404600-85422200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:85404600-85422200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:85413600-85418400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:85413800-85415400	Enhancers	Fetal Lung	lung
7	chr9:85414200-85415400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:85415200-85416200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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