Variant report

Variant	rs73482047
Chromosome Location	chr9:85438842-85438843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1005991	1.00[AMR][1000 genomes]
rs17085770	1.00[AMR][1000 genomes]
rs2208612	1.00[AMR][1000 genomes]
rs7029171	1.00[AMR][1000 genomes]
rs7033047	1.00[AMR][1000 genomes]
rs73477951	1.00[AMR][1000 genomes]
rs73477963	1.00[AMR][1000 genomes]
rs73477966	1.00[AMR][1000 genomes]
rs73477983	1.00[AMR][1000 genomes]
rs73479910	1.00[AMR][1000 genomes]
rs73479934	1.00[AMR][1000 genomes]
rs73479936	1.00[AMR][1000 genomes]
rs73479943	1.00[AMR][1000 genomes]
rs73479969	1.00[AMR][1000 genomes]
rs73479971	1.00[AMR][1000 genomes]
rs73479983	1.00[AMR][1000 genomes]
rs7864468	1.00[AMR][1000 genomes]
rs7867422	0.95[AFR][1000 genomes]
rs7868662	1.00[AMR][1000 genomes]
rs7870881	1.00[AMR][1000 genomes]
rs7871261	1.00[AMR][1000 genomes]
rs7872385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85423600-85439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:85423800-85443200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:85433600-85457200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:85434800-85440200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:85436600-85442000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:85436800-85442400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:85437000-85440600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:85437400-85440800	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:85438000-85440200	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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