Variant report

Variant	nsv819417
Chromosome Location	chr15:74005796-74006789
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:3)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74005160..74008724-chr15:74017261..74021043,5	MCF-7	breast:
2	chr15:74006337..74009234-chr15:74010683..74012522,2	K562	blood:
3	chr15:74006471..74009141-chr15:74023643..74026024,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf60-2	chr15:74005275-74006855	NONHSAT047153

No data

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	CD276	hsa-miR-29a-3p	chr15:74006636-74006643
2	CD276	hsa-let-7a-5p	chr15:74006383-74006389
3	CD276	hsa-miR-29a-3p	chr15:74006622-74006643

Extended variants
information (count: 45 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551451570	chr15:74005821-74005822	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs566878568	chr15:74005829-74005830	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs1044540	chr15:74005830-74005831	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs549058548	chr15:74005889-74005890	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs147193445	chr15:74005894-74005895	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs535250934	chr15:74005928-74005929	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs550788538	chr15:74005948-74005949	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs149742284	chr15:74005950-74005951	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs368822846	chr15:74005953-74005954	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs79829424	chr15:74005977-74005978	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs539745058	chr15:74005989-74005990	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs191790483	chr15:74006012-74006013	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs531060711	chr15:74006016-74006017	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs75461818	chr15:74006108-74006109	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs74483206	chr15:74006109-74006110	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs369378223	chr15:74006124-74006125	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs572883271	chr15:74006171-74006172	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs533809963	chr15:74006173-74006174	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs571895056	chr15:74006182-74006183	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs555496186	chr15:74006195-74006196	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs547890362	chr15:74006217-74006218	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs79333664	chr15:74006221-74006222	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs573806288	chr15:74006224-74006225	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs182879085	chr15:74006227-74006228	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs563112340	chr15:74006229-74006230	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs186442060	chr15:74006240-74006241	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs199957112	chr15:74006251-74006252	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs545685681	chr15:74006262-74006263	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs561502193	chr15:74006264-74006265	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs140463237	chr15:74006316-74006317	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs548993494	chr15:74006327-74006328	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs561031419	chr15:74006329-74006330	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs555354761	chr15:74006350-74006351	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs531850414	chr15:74006370-74006371	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs144321764	chr15:74006382-74006383	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
36	rs374296672	chr15:74006391-74006392	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs11072436	chr15:74006422-74006423	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs551642207	chr15:74006588-74006589	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs1044570	chr15:74006632-74006633	Weak transcription Strong transcription	lncRNA miRNA target site	1 gene(s)	Overlapped CNVs	n/a
40	rs566816110	chr15:74006643-74006644	Weak transcription Strong transcription	lncRNA miRNA target site	1 gene(s)	Overlapped CNVs	n/a
41	rs533744643	chr15:74006681-74006682	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs1044581	chr15:74006691-74006692	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs1044589	chr15:74006722-74006723	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs573743683	chr15:74006741-74006742	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs116643657	chr15:74006774-74006775	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Prostate cancer	16573809	CNVD
Autism	17322880	CNVD
phobic disorder	16773131	CNVD
Autism	21480499	CNVD
Disorders of sex development	22290220	CNVD
Mental retardation	19951919	CNVD
Mental retardation	16773131	CNVD
T-cell lymphomas	19863542	CNVD
15q24 microdeletion syndrome	22180641	CNVD
15q24 microdeletion syndrome	19921647	CNVD
Disease	22216833	CNVD
Mental retardation	17360722	CNVD
15q24 microdeletion syndrome	22216833	CNVD
15q24 microdeletion syndrome	22283845	CNVD
Developmental delay	17932688	CNVD
craniofacial dysmorphism	17932688	CNVD
digital and genital abnormalities	17932688	CNVD
Breast cancer	21364760	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:136 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
2	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
3	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
4	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
7	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
10	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
11	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr15:73993000-74007400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:73993200-74007000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:73993400-74006400	Strong transcription	Liver	Liver
17	chr15:73993400-74007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:73993600-74006800	Strong transcription	NHEK	skin
19	chr15:73993600-74007400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:73993600-74007400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:73993600-74007600	Strong transcription	Fetal Brain Female	brain
22	chr15:73993600-74008000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:73993800-74007400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:73994000-74006600	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr15:73994000-74007200	Strong transcription	Brain Germinal Matrix	brain
26	chr15:73994200-74006600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr15:73994200-74006600	Strong transcription	Aorta	Aorta
28	chr15:73994200-74007200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:73994400-74006400	Strong transcription	NHLF	lung
30	chr15:73994400-74007400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:73994600-74007400	Strong transcription	Adipose Nuclei	Adipose
32	chr15:73994800-74007200	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr15:73995200-74007200	Strong transcription	Placenta	Placenta
34	chr15:73995400-74006600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:73996200-74006600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:73996200-74006800	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:73996400-74006200	Strong transcription	Rectal Smooth Muscle	rectum
38	chr15:73996400-74006400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr15:73996600-74006400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:73996800-74007200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:73997000-74007200	Strong transcription	HSMMtube	muscle
42	chr15:73997200-74006600	Weak transcription	A549	lung
43	chr15:73997400-74006600	Strong transcription	Gastric	stomach
44	chr15:73997400-74007200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:73997600-74007400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:73997600-74007600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr15:73997800-74006600	Strong transcription	Colon Smooth Muscle	Colon
48	chr15:73997800-74007400	Strong transcription	Fetal Muscle Leg	muscle
49	chr15:73998400-74006000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:73999200-74007400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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