Variant report

Variant	rs11072436
Chromosome Location	chr15:74006422-74006423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74006337..74009234-chr15:74010683..74012522,2	K562	blood:
2	chr15:74005160..74008724-chr15:74017261..74021043,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf60-2	chr15:74005275-74006855	NONHSAT047153

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11574486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414537	1.00[AMR][1000 genomes]
rs28472391	1.00[AMR][1000 genomes]
rs28570272	1.00[AMR][1000 genomes]
rs28616872	1.00[AMR][1000 genomes]
rs8027445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819417	chr15:74005796-74006789	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
2	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
3	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
4	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
7	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
10	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
11	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr15:73993000-74007400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:73993200-74007000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:73993400-74007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:73993600-74006800	Strong transcription	NHEK	skin
18	chr15:73993600-74007400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:73993600-74007400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:73993600-74007600	Strong transcription	Fetal Brain Female	brain
21	chr15:73993600-74008000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:73993800-74007400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:73994000-74006600	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr15:73994000-74007200	Strong transcription	Brain Germinal Matrix	brain
25	chr15:73994200-74006600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:73994200-74006600	Strong transcription	Aorta	Aorta
27	chr15:73994200-74007200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:73994400-74007400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:73994600-74007400	Strong transcription	Adipose Nuclei	Adipose
30	chr15:73994800-74007200	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr15:73995200-74007200	Strong transcription	Placenta	Placenta
32	chr15:73995400-74006600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:73996200-74006600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:73996200-74006800	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:73996800-74007200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:73997000-74007200	Strong transcription	HSMMtube	muscle
37	chr15:73997200-74006600	Weak transcription	A549	lung
38	chr15:73997400-74006600	Strong transcription	Gastric	stomach
39	chr15:73997400-74007200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:73997600-74007400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:73997600-74007600	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:73997800-74006600	Strong transcription	Colon Smooth Muscle	Colon
43	chr15:73997800-74007400	Strong transcription	Fetal Muscle Leg	muscle
44	chr15:73999200-74007400	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:73999400-74006600	Strong transcription	Ovary	ovary
46	chr15:73999400-74006600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:74001200-74006800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:74001200-74007000	Weak transcription	Hela-S3	cervix
49	chr15:74002400-74007000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:74002400-74008800	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links