Variant report

Variant	rs28570272
Chromosome Location	chr15:73944995-73944996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11072436	1.00[AMR][1000 genomes]
rs11574486	1.00[AMR][1000 genomes]
rs28414537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28472391	1.00[AMR][1000 genomes]
rs28616872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73944000-73946800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:73944000-73946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:73944200-73947000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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