Variant report

Variant	nsv820121
Chromosome Location	chr10:858606-858907
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:851217..854668-chr10:856285..859147,3	MCF-7	breast:
2	chr10:857383..859373-chr10:865645..868472,2	MCF-7	breast:
3	chr10:852322..854745-chr10:858049..860254,2	K562	blood:

Variant related genes	Relation type
ENSG00000107929	chromatin interactions

Extended variants
information (count: 25 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74115585	chr10:858609-858610	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs565059369	chr10:858610-858611	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs550258389	chr10:858662-858663	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs2892160	chr10:858671-858672	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs563584409	chr10:858674-858675	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs145677703	chr10:858692-858693	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs56215024	chr10:858701-858702	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs188031987	chr10:858740-858741	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs368748710	chr10:858746-858747	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs533860961	chr10:858767-858768	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs559713818	chr10:858784-858785	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs199858821	chr10:858790-858791	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs570638590	chr10:858807-858808	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs144868339	chr10:858817-858818	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs369739919	chr10:858818-858819	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs200155088	chr10:858835-858836	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs375228225	chr10:858836-858837	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs375294911	chr10:858842-858843	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs369034490	chr10:858857-858858	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs372671338	chr10:858861-858862	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs202103534	chr10:858862-858863	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs375769674	chr10:858873-858874	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs370989515	chr10:858883-858884	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs142589913	chr10:858885-858886	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs201343796	chr10:858895-858896	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD
Aortic dissecting aneurysms	22263138	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:130 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:849600-877800	Strong transcription	Fetal Intestine Small	intestine
2	chr10:850600-859000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:850800-862800	Weak transcription	Right Atrium	heart
4	chr10:850800-864800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:850800-877800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:851000-883000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:851200-867000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:851200-872400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr10:851200-877800	Strong transcription	Fetal Stomach	stomach
10	chr10:851400-859000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:851400-862200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:851400-862800	Strong transcription	Lung	lung
13	chr10:851400-867200	Strong transcription	Placenta	Placenta
14	chr10:851400-878600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:851600-863600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr10:851600-865400	Strong transcription	Pancreas	Pancrea
17	chr10:851600-867200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:851600-872800	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:851600-876600	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:851600-883000	Strong transcription	Fetal Intestine Large	intestine
21	chr10:851600-889800	Strong transcription	Dnd41	blood
22	chr10:851600-890800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr10:851600-895600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:851800-865600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:851800-867800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:851800-868000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:851800-877800	Strong transcription	Liver	Liver
28	chr10:851800-879000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:851800-894000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:851800-895800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:852000-868000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:852000-872400	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr10:852000-876200	Strong transcription	Ovary	ovary
34	chr10:852000-877200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:852000-882800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:852200-864600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:852200-864600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:852200-872800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:852200-877800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr10:852400-858800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:852400-859200	Strong transcription	HSMM	muscle
43	chr10:852400-867200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr10:852400-875600	Strong transcription	Thymus	Thymus
45	chr10:852400-876800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:852400-877800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr10:852600-864600	Strong transcription	GM12878-XiMat	blood
48	chr10:852600-865000	Strong transcription	Osteobl	bone
49	chr10:852600-867800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr10:852600-877600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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