Variant report

Variant	rs2892160
Chromosome Location	chr10:858671-858672
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:857383..859373-chr10:865645..868472,2	MCF-7	breast:
2	chr10:851217..854668-chr10:856285..859147,3	MCF-7	breast:
3	chr10:852322..854745-chr10:858049..860254,2	K562	blood:

Variant related genes	Relation type
ENSG00000107929	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1013504	1.00[YRI][hapmap]
rs10904536	1.00[YRI][hapmap]
rs11253308	1.00[YRI][hapmap]
rs12570137	1.00[YRI][hapmap]
rs12768348	1.00[YRI][hapmap]
rs12769002	1.00[YRI][hapmap]
rs4881495	1.00[YRI][hapmap]
rs7914758	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1048859	chr10:442805-887622	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1039958	chr10:450753-889167	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv540400	chr10:450753-889167	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	nsv549753	chr10:458477-894838	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
8	nsv948602	chr10:708293-944641	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
11	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
12	nsv894718	chr10:763714-861390	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
16	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
17	nsv1048707	chr10:834439-915534	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv466698	chr10:836115-888073	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv549766	chr10:836115-888073	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	nsv5498	chr10:849137-860462	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv820121	chr10:858606-858907	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:849600-877800	Strong transcription	Fetal Intestine Small	intestine
2	chr10:850600-859000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:850800-862800	Weak transcription	Right Atrium	heart
4	chr10:850800-864800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:850800-877800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:851000-883000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:851200-867000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:851200-872400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr10:851200-877800	Strong transcription	Fetal Stomach	stomach
10	chr10:851400-859000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:851400-862200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:851400-862800	Strong transcription	Lung	lung
13	chr10:851400-867200	Strong transcription	Placenta	Placenta
14	chr10:851400-878600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:851600-863600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr10:851600-865400	Strong transcription	Pancreas	Pancrea
17	chr10:851600-867200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:851600-872800	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:851600-876600	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:851600-883000	Strong transcription	Fetal Intestine Large	intestine
21	chr10:851600-889800	Strong transcription	Dnd41	blood
22	chr10:851600-890800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr10:851600-895600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:851800-865600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:851800-867800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:851800-868000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:851800-877800	Strong transcription	Liver	Liver
28	chr10:851800-879000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:851800-894000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:851800-895800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:852000-868000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:852000-872400	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr10:852000-876200	Strong transcription	Ovary	ovary
34	chr10:852000-877200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:852000-882800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:852200-864600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:852200-864600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:852200-872800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:852200-877800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr10:852400-858800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:852400-859200	Strong transcription	HSMM	muscle
43	chr10:852400-867200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr10:852400-875600	Strong transcription	Thymus	Thymus
45	chr10:852400-876800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:852400-877800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr10:852600-864600	Strong transcription	GM12878-XiMat	blood
48	chr10:852600-865000	Strong transcription	Osteobl	bone
49	chr10:852600-867800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr10:852600-877600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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