Variant report

Variant	nsv820139
Chromosome Location	chr11:65270215-65271374
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:377)
CpG islands
(count:0)
Chromatin interactive
region (count:124)
LncRNA
region (count:44)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:377 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:65266047-65275338	K562	blood:	n/a	chr11:65269298-65269314
2	ATF2	chr11:65264270-65275525	GM12878	blood:	n/a	n/a
3	ATF2	chr11:65264623-65275433	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr11:65265850-65275546	GM12878	blood:	n/a	n/a
5	ATF2	chr11:65267481-65275471	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF3	chr11:65269525-65270746	K562	blood:	n/a	n/a
7	ATF3	chr11:65269832-65275555	A549	lung:	n/a	chr11:65274227-65274241
8	BACH1	chr11:65266172-65275438	K562	blood:	n/a	n/a
9	BATF	chr11:65270013-65270225	GM12878	blood:	n/a	chr11:65270129-65270140
10	BCL11A	chr11:65270021-65270805	GM12878	blood:	n/a	n/a
11	BCL3	chr11:65268336-65275533	K562	blood:	n/a	chr11:65275167-65275176 chr11:65268728-65268737
12	BCL3	chr11:65270021-65270908	K562	blood:	n/a	n/a
13	BCL3	chr11:65271261-65276338	A549	lung:	n/a	chr11:65275167-65275176
14	BCL3	chr11:65271158-65273174	K562	blood:	n/a	n/a
15	BCL3	chr11:65265475-65276400	A549	lung:	n/a	chr11:65275167-65275176 chr11:65268728-65268737
16	BCLAF1	chr11:65266206-65275558	GM12878	blood:	n/a	chr11:65275167-65275176 chr11:65268728-65268737
17	BCLAF1	chr11:65266043-65275529	K562	blood:	n/a	chr11:65275167-65275176 chr11:65268728-65268737
18	BCLAF1	chr11:65264313-65275629	GM12878	blood:	n/a	chr11:65275167-65275176 chr11:65268728-65268737
19	BCLAF1	chr11:65266133-65275509	K562	blood:	n/a	chr11:65275167-65275176 chr11:65268728-65268737
20	BDP1	chr11:65269198-65270253	Hela-S3	cervix:	n/a	n/a
21	BHLHE40	chr11:65270447-65272952	GM12878	blood:	n/a	n/a
22	BRCA1	chr11:65270397-65275350	Hela-S3	cervix:	n/a	chr11:65271839-65271846
23	BRCA1	chr11:65270270-65272804	H1-hESC	embryonic stem cell:	n/a	chr11:65271839-65271846
24	BRCA1	chr11:65270110-65270746	GM12878	blood:	n/a	n/a
25	BRF2	chr11:65270487-65270904	Hela-S3	cervix:	n/a	n/a
26	CBX3	chr11:65270085-65275635	K562	blood:	n/a	chr11:65273200-65273211 chr11:65272052-65272063
27	CCNT2	chr11:65268770-65275386	K562	blood:	n/a	chr11:65268927-65268936 chr11:65269311-65269320 chr11:65271755-65271764
28	CEBPB	chr11:65270481-65270773	HepG2	liver:	n/a	n/a
29	CEBPB	chr11:65269753-65275425	K562	blood:	n/a	chr11:65269969-65269980 chr11:65275087-65275100 chr11:65272155-65272167
30	CEBPB	chr11:65264420-65275614	GM12878	blood:	n/a	chr11:65269969-65269980 chr11:65266097-65266106 chr11:65267019-65267030 chr11:65266097-65266106 chr11:65269052-65269064 chr11:65267495-65267503 chr11:65275087-65275100 chr11:65272155-65272167 chr11:65266097-65266106
31	CEBPB	chr11:65270432-65270889	A549	lung:	n/a	n/a
32	CEBPB	chr11:65270549-65270888	A549	lung:	n/a	n/a
33	CEBPB	chr11:65270343-65271029	A549	lung:	n/a	n/a
34	CEBPB	chr11:65270286-65271019	K562	blood:	n/a	n/a
35	CEBPB	chr11:65270424-65270874	Hela-S3	cervix:	n/a	n/a
36	CEBPD	chr11:65269833-65275577	K562	blood:	n/a	chr11:65275088-65275099
37	CEBPD	chr11:65265721-65275629	K562	blood:	n/a	chr11:65266097-65266106 chr11:65275088-65275099 chr11:65267020-65267031
38	CHD1	chr11:65263563-65276653	IMR90	lung:	n/a	chr11:65266494-65266504 chr11:65265186-65265196 chr11:65274221-65274231 chr11:65264920-65264930
39	CHD1	chr11:65264423-65275264	GM12878	blood:	n/a	chr11:65266494-65266504 chr11:65265186-65265196 chr11:65274221-65274231 chr11:65264920-65264930
40	CHD1	chr11:65264978-65275414	H1-hESC	embryonic stem cell:	n/a	chr11:65266494-65266504 chr11:65265186-65265196 chr11:65274221-65274231
41	CHD2	chr11:65270061-65276053	H1-hESC	embryonic stem cell:	n/a	chr11:65274221-65274231
42	CHD2	chr11:65267538-65276411	K562	blood:	n/a	chr11:65274221-65274231
43	CHD2	chr11:65271343-65275510	GM12878	blood:	n/a	chr11:65274221-65274231
44	CHD2	chr11:65270128-65270989	GM12878	blood:	n/a	n/a
45	CREB1	chr11:65269968-65275461	K562	blood:	n/a	n/a
46	CREB1	chr11:65263751-65275592	GM12878	blood:	n/a	n/a
47	CREB1	chr11:65264503-65275491	K562	blood:	n/a	n/a
48	CTCF	chr11:65270620-65270770	HMF	breast:	n/a	n/a
49	CTCF	chr11:65266422-65271074	T-47D	breast:	n/a	n/a
50	CTCF	chr11:65271076-65273553	T-47D	breast:	n/a	n/a

No data

(count:124 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr10:121411700..121412298-chr11:65271120..65272077,2	Hela-S3	cervix:
2	chr11:65269756..65270537-chr3:40566015..40566520,2	HCT-116	colon:
3	chr11:65271336..65273215-chr7:100025186..100027775,2	K562	blood:
4	chr11:65270912..65271507-chr12:25538570..25539378,2	Hela-S3	cervix:
5	chr11:65270290..65271856-chr22:39915323..39918030,2	K562	blood:
6	chr11:65270497..65271452-chr6:30710093..30710890,2	Hela-S3	cervix:
7	chr11:65116402..65157784-chr11:65261420..65278410,154	K562	blood:
8	chr11:65270878..65274838-chr5:137802440..137805334,3	K562	blood:
9	chr11:65270904..65271423-chr13:110958762..110959484,2	Hela-S3	cervix:
10	chr11:65270859..65271421-chrX:69653416..69654388,2	Hela-S3	cervix:
11	chr1:156698015..156698672-chr11:65269788..65270370,2	Hela-S3	cervix:
12	chr11:65270144..65270861-chr13:45151438..45151968,2	Hela-S3	cervix:
13	chr1:147806622..147807616-chr11:65269702..65270619,2	Hela-S3	cervix:
14	chr11:65270791..65271461-chr9:98188622..98189530,2	Hela-S3	cervix:
15	chr11:65270818..65272335-chr15:65596544..65598769,2	K562	blood:
16	chr11:65270231..65271098-chr17:39844838..39845726,2	Hela-S3	cervix:
17	chr11:65269512..65272453-chr8:141523965..141525980,2	MCF-7	breast:
18	chr11:65269866..65270571-chr15:60685040..60685839,2	Hela-S3	cervix:
19	chr11:65269841..65270672-chr2:26568629..26569532,2	Hela-S3	cervix:
20	chr1:27190798..27191753-chr11:65270221..65271041,2	Hela-S3	cervix:
21	chr11:65270404..65271318-chr16:54319596..54320096,2	Hela-S3	cervix:
22	chr1:53685931..53686470-chr11:65270255..65271113,2	Hela-S3	cervix:
23	chr11:65270060..65272475-chr8:30012464..30015330,2	K562	blood:
24	chr11:65270710..65271463-chr15:74428349..74429318,2	Hela-S3	cervix:
25	chr11:65270799..65273289-chr17:39847777..39849997,2	K562	blood:
26	chr1:17230384..17232328-chr11:65270630..65273956,3	K562	blood:
27	chr11:65271118..65271773-chr7:1543421..1544056,2	Hela-S3	cervix:
28	chr10:89621834..89622546-chr11:65271316..65272076,2	Hela-S3	cervix:
29	chr11:65268396..65270850-chr17:57915073..57916598,2	MCF-7	breast:
30	chr11:65270753..65271412-chr12:124086119..124086943,2	Hela-S3	cervix:
31	chr11:65270981..65271618-chr6:32939928..32940572,2	Hela-S3	cervix:
32	chr1:244816233..244816915-chr11:65270788..65271601,2	MCF-7	breast:
33	chr11:65270524..65271210-chr5:95997450..95998003,2	Hela-S3	cervix:
34	chr11:10829984..10830761-chr11:65271181..65272154,3	Hela-S3	cervix:
35	chr11:65270368..65274938-chr11:65339549..65344578,6	MCF-7	breast:
36	chr11:65269923..65272492-chr16:85833808..85835393,2	K562	blood:
37	chr11:65270743..65271667-chr16:75018633..75019348,2	Hela-S3	cervix:
38	chr11:65270912..65273341-chr11:65336472..65339465,2	MCF-7	breast:
39	chr1:151042650..151043532-chr11:65271261..65272176,2	Hela-S3	cervix:
40	chr11:65271002..65271982-chr4:186124381..186125166,2	Hela-S3	cervix:
41	chr11:65270481..65271475-chr19:49375339..49375998,2	Hela-S3	cervix:
42	chr1:220701670..220702519-chr11:65270081..65271005,2	Hela-S3	cervix:
43	chr11:65270598..65271155-chr14:50358897..50359406,2	Hela-S3	cervix:
44	chr11:65270401..65272397-chr11:65308248..65310237,2	K562	blood:
45	chr11:65269998..65270558-chr6:159239924..159240447,2	Hela-S3	cervix:
46	chr11:65270751..65271651-chr2:36582856..36583420,2	Hela-S3	cervix:
47	chr11:65271175..65271899-chr15:49169755..49170344,2	Hela-S3	cervix:
48	chr11:65178877..65218546-chr11:65218612..65286191,1014	K562	blood:
49	chr1:156252200..156252714-chr11:65271215..65272013,2	Hela-S3	cervix:
50	chr11:65270912..65271570-chr18:20512886..20513703,2	Hela-S3	cervix:

(count:44 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
2	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
3	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
4	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
5	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
6	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
7	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
8	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
9	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
10	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
11	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
12	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
13	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
14	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
15	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
16	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
17	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
18	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
19	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
20	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
21	lnc-LTBP3-2	chr11:65266959-65271093	NONHSAT022147
22	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
23	lnc-LTBP3-2	chr11:65270590-65271258	NONHSAT022110
24	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
25	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
26	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
27	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
28	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
29	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
30	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
31	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
32	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
33	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
34	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
35	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
36	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
37	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
38	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
39	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
40	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
41	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
42	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
43	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
44	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562

No data

Variant related genes	Relation type
ENSG00000270117	TF binding region
ENSG00000255302	chromatin interactions
ENSG00000177606	chromatin interactions
ENSG00000143319	chromatin interactions
ENSG00000248275	chromatin interactions
ENSG00000153113	chromatin interactions
ENSG00000197846	chromatin interactions
ENSG00000177410	chromatin interactions
ENSG00000014216	chromatin interactions
ENSG00000201524	chromatin interactions
ENSG00000112851	chromatin interactions
ENSG00000132823	chromatin interactions
ENSG00000173812	chromatin interactions
ENSG00000197622	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000199568	chromatin interactions
ENSG00000164880	chromatin interactions
ENSG00000101773	chromatin interactions
ENSG00000268886	chromatin interactions
ENSG00000137312	chromatin interactions
ENSG00000124529	chromatin interactions
ENSG00000168216	chromatin interactions
ENSG00000143303	chromatin interactions
ENSG00000202408	chromatin interactions
ENSG00000087074	chromatin interactions
ENSG00000240370	chromatin interactions
ENSG00000078487	chromatin interactions
ENSG00000117318	chromatin interactions
ENSG00000169895	chromatin interactions
ENSG00000264910	chromatin interactions
ENSG00000187498	chromatin interactions
ENSG00000146670	chromatin interactions
ENSG00000204256	chromatin interactions
ENSG00000138018	chromatin interactions
ENSG00000137500	chromatin interactions
ENSG00000010626	chromatin interactions
ENSG00000104472	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000168056	chromatin interactions
ENSG00000143458	chromatin interactions
ENSG00000255234	chromatin interactions
ENSG00000178149	chromatin interactions
ENSG00000223947	chromatin interactions
ENSG00000173825	chromatin interactions
ENSG00000231925	chromatin interactions
ENSG00000158987	chromatin interactions
ENSG00000197182	chromatin interactions
ENSG00000071082	chromatin interactions
ENSG00000177508	chromatin interactions
ENSG00000150938	chromatin interactions
ENSG00000255478	chromatin interactions
ENSG00000139842	chromatin interactions
ENSG00000185278	chromatin interactions
ENSG00000266947	chromatin interactions
ENSG00000111364	chromatin interactions
ENSG00000176973	chromatin interactions
ENSG00000183718	chromatin interactions
ENSG00000271869	chromatin interactions
ENSG00000166750	chromatin interactions
ENSG00000149532	chromatin interactions
ENSG00000178057	chromatin interactions
ENSG00000137203	chromatin interactions
ENSG00000185634	chromatin interactions
ENSG00000146063	chromatin interactions
ENSG00000149716	chromatin interactions
ENSG00000121644	chromatin interactions
ENSG00000172888	chromatin interactions
ENSG00000248668	chromatin interactions
ENSG00000197111	chromatin interactions
ENSG00000092820	chromatin interactions
ENSG00000234741	chromatin interactions
ENSG00000272273	chromatin interactions
ENSG00000162241	chromatin interactions
ENSG00000256591	chromatin interactions
ENSG00000256316	chromatin interactions
ENSG00000264817	chromatin interactions
ENSG00000172939	chromatin interactions
ENSG00000116141	chromatin interactions
ENSG00000167986	chromatin interactions
ENSG00000092148	chromatin interactions
ENSG00000206573	chromatin interactions
ENSG00000187189	chromatin interactions
ENSG00000085063	chromatin interactions
ENSG00000126391	chromatin interactions
ENSG00000083544	chromatin interactions
ENSG00000110321	chromatin interactions
ENSG00000237857	chromatin interactions
ENSG00000104671	chromatin interactions
ENSG00000198952	chromatin interactions
ENSG00000124693	chromatin interactions
ENSG00000111671	chromatin interactions
ENSG00000143578	chromatin interactions
ENSG00000272173	chromatin interactions
ENSG00000130726	chromatin interactions
ENSG00000110367	chromatin interactions
ENSG00000103091	chromatin interactions
ENSG00000173442	chromatin interactions
ENSG00000200156	chromatin interactions
ENSG00000162384	chromatin interactions
ENSG00000272426	chromatin interactions
ENSG00000259818	chromatin interactions
ENSG00000164323	chromatin interactions
ENSG00000126226	chromatin interactions
ENSG00000131143	chromatin interactions
ENSG00000149476	chromatin interactions
ENSG00000143570	chromatin interactions
ENSG00000260233	chromatin interactions
ENSG00000139517	chromatin interactions
ENSG00000173567	chromatin interactions
ENSG00000149809	chromatin interactions
ENSG00000254614	chromatin interactions
ENSG00000041357	chromatin interactions
ENSG00000111817	chromatin interactions
ENSG00000124201	chromatin interactions
ENSG00000245532	chromatin interactions
ENSG00000173465	chromatin interactions
ENSG00000175787	chromatin interactions
ENSG00000237021	chromatin interactions
ENSG00000168242	chromatin interactions
ENSG00000181798	chromatin interactions
ENSG00000146834	chromatin interactions
ENSG00000128272	chromatin interactions
ENSG00000202538	chromatin interactions
ENSG00000083720	chromatin interactions
ROBO1	lncRNA
LPHN2	lncRNA
MAPK8	lncRNA
MIA2	lncRNA
ABCA1	lncRNA
CDH2	lncRNA
FN1	lncRNA
SNAI2	lncRNA
CSF1	lncRNA
HMMR	lncRNA
PTBP3	lncRNA
COL6A1	lncRNA
MAPK9	lncRNA
STC1	lncRNA
CXCL5	lncRNA
NNMT	lncRNA
ADAMTS12	lncRNA
CA2	lncRNA
HNF4G	lncRNA
CCT4	lncRNA
LAYN	lncRNA
ZEB1	lncRNA
CTHRC1	lncRNA
LPAR1	lncRNA
GPC6	lncRNA
PRKCE	lncRNA
BMPER	lncRNA
MCAM	lncRNA
DRD1	lncRNA
CDCP1	lncRNA
RASSF6	lncRNA
CDH1	lncRNA
MAPK3	lncRNA
MAP2K1	lncRNA
LY6K	lncRNA
MAPK10	lncRNA
ZEB2	lncRNA
CPM	lncRNA
MAP2K2	lncRNA
RPE65	miRNA target sites
APPL1	miRNA target sites
PAPOLG	miRNA target sites
SGMS1	miRNA target sites
BTBD12	miRNA target sites
CSNK1G3	miRNA target sites
SIK1	miRNA target sites
RNF19A	miRNA target sites
ABCA1	miRNA target sites
ABCB11	miRNA target sites
IRS2	miRNA target sites
PCM1	miRNA target sites
SLC39A14	miRNA target sites
GPBP1L1	miRNA target sites
GFPT2	miRNA target sites
HMGB2	miRNA target sites
HIF1A	miRNA target sites
PCGF2	miRNA target sites
BRWD1	miRNA target sites
ZC3H12C	miRNA target sites
ERBB2IP	miRNA target sites
STRBP	miRNA target sites
MDM2	miRNA target sites
SPRYD4	miRNA target sites
NFYC	miRNA target sites
SAMD8	miRNA target sites
ANO8	miRNA target sites
NUFIP2	miRNA target sites
MLX	miRNA target sites
ZFC3H1	miRNA target sites
EDEM1	miRNA target sites
TMED7	miRNA target sites
RTN4	miRNA target sites
RAP2C	miRNA target sites
BICD2	miRNA target sites
LDHA	miRNA target sites

Extended variants
information (count: 73 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564575824	chr11:65270226-65270227	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	92 gene(s)	Overlapped CNVs	n/a
2	rs1144797	chr11:65270234-65270235	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	93 gene(s)	Overlapped CNVs	n/a
3	rs527356315	chr11:65270235-65270236	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	93 gene(s)	Overlapped CNVs	n/a
4	rs547145680	chr11:65270264-65270265	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	95 gene(s)	Overlapped CNVs	n/a
5	rs544964877	chr11:65270334-65270335	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
6	rs374743226	chr11:65270335-65270336	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
7	rs369705830	chr11:65270342-65270343	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
8	rs200574654	chr11:65270366-65270367	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
9	rs564704250	chr11:65270372-65270373	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	97 gene(s)	Overlapped CNVs	n/a
10	rs561051925	chr11:65270394-65270395	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	97 gene(s)	Overlapped CNVs	n/a
11	rs578258669	chr11:65270399-65270400	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	97 gene(s)	Overlapped CNVs	n/a
12	rs373479266	chr11:65270405-65270406	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
13	rs376153746	chr11:65270415-65270416	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
14	rs529425393	chr11:65270449-65270450	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
15	rs529172575	chr11:65270459-65270460	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
16	rs371082259	chr11:65270486-65270487	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	98 gene(s)	Overlapped CNVs	n/a
17	rs373237121	chr11:65270496-65270497	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	98 gene(s)	Overlapped CNVs	n/a
18	rs148133626	chr11:65270498-65270499	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	100 gene(s)	Overlapped CNVs	n/a
19	rs370638337	chr11:65270509-65270510	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	100 gene(s)	Overlapped CNVs	n/a
20	rs374700152	chr11:65270514-65270515	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	100 gene(s)	Overlapped CNVs	n/a
21	rs569567195	chr11:65270527-65270528	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	101 gene(s)	Overlapped CNVs	n/a
22	rs367742169	chr11:65270570-65270571	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
23	rs371179067	chr11:65270589-65270590	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
24	rs538579405	chr11:65270590-65270591	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
25	rs551783887	chr11:65270598-65270599	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	99 gene(s)	Overlapped CNVs	n/a
26	rs571641196	chr11:65270637-65270638	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	102 gene(s)	Overlapped CNVs	n/a
27	rs114213656	chr11:65270650-65270651	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	102 gene(s)	Overlapped CNVs	n/a
28	rs368725127	chr11:65270677-65270678	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	101 gene(s)	Overlapped CNVs	n/a
29	rs574084712	chr11:65270678-65270679	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	101 gene(s)	Overlapped CNVs	n/a
30	rs372419796	chr11:65270688-65270689	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	101 gene(s)	Overlapped CNVs	n/a
31	rs375703167	chr11:65270692-65270693	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	102 gene(s)	Overlapped CNVs	n/a
32	rs367865679	chr11:65270744-65270745	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	103 gene(s)	Overlapped CNVs	n/a
33	rs371646684	chr11:65270801-65270802	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	109 gene(s)	Overlapped CNVs	n/a
34	rs374666797	chr11:65270807-65270808	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	109 gene(s)	Overlapped CNVs	n/a
35	rs188469226	chr11:65270815-65270816	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a
36	rs555983322	chr11:65270820-65270821	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a
37	rs575918879	chr11:65270833-65270834	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a
38	rs372595584	chr11:65270845-65270846	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	112 gene(s)	Overlapped CNVs	n/a
39	rs200351093	chr11:65270856-65270857	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a
40	rs192992046	chr11:65270862-65270863	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a
41	rs116978099	chr11:65270865-65270866	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a
42	rs571909713	chr11:65270871-65270872	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a
43	rs184847017	chr11:65270881-65270882	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	110 gene(s)	Overlapped CNVs	n/a
44	rs376686732	chr11:65270906-65270907	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	112 gene(s)	Overlapped CNVs	n/a
45	rs560773874	chr11:65270908-65270909	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	112 gene(s)	Overlapped CNVs	n/a
46	rs113847292	chr11:65270910-65270911	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	112 gene(s)	Overlapped CNVs	n/a
47	rs373626664	chr11:65270924-65270925	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	114 gene(s)	Overlapped CNVs	n/a
48	rs376748482	chr11:65270936-65270937	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	114 gene(s)	Overlapped CNVs	n/a
49	rs370630118	chr11:65270950-65270951	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	114 gene(s)	Overlapped CNVs	n/a
50	rs189724202	chr11:65270974-65270975	Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	111 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Prostate cancer	18779856	CNVD
Cancer	17160897	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:159 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65263600-65271600	Active TSS	Right Ventricle	heart
2	chr11:65264600-65271800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:65264600-65272800	Active TSS	Psoas Muscle	Psoas
4	chr11:65264800-65270400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:65264800-65272200	Active TSS	Fetal Intestine Small	intestine
6	chr11:65265200-65270400	Active TSS	Lung	lung
7	chr11:65265200-65270400	Active TSS	Ovary	ovary
8	chr11:65265200-65270800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:65265400-65272000	ZNF genes & repeats	Fetal Brain Male	brain
10	chr11:65266800-65272400	ZNF genes & repeats	Fetal Heart	heart
11	chr11:65266800-65274000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:65266800-65274200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:65267000-65273600	Transcr. at gene 5' and 3'	Fetal Lung	lung
14	chr11:65267000-65273800	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:65267000-65273800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
16	chr11:65267000-65274200	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
17	chr11:65267200-65273600	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:65267200-65273800	Transcr. at gene 5' and 3'	K562	blood
19	chr11:65267200-65274000	Transcr. at gene 5' and 3'	Dnd41	blood
20	chr11:65267200-65274200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:65267400-65273800	Transcr. at gene 5' and 3'	NHEK	skin
22	chr11:65267400-65273800	Transcr. at gene 5' and 3'	Osteobl	bone
23	chr11:65267400-65274000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:65267400-65274200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:65267400-65274200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
26	chr11:65267400-65274400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
27	chr11:65267600-65270800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr11:65267600-65272200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells	blood
29	chr11:65267600-65273400	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
30	chr11:65267600-65273600	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
31	chr11:65267600-65273800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
32	chr11:65267600-65273800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:65267600-65273800	Transcr. at gene 5' and 3'	HMEC	breast
34	chr11:65267600-65274000	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
35	chr11:65267600-65274000	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
36	chr11:65267600-65274200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
37	chr11:65267600-65274200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
38	chr11:65267600-65274400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:65267600-65274400	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
40	chr11:65267800-65270800	Transcr. at gene 5' and 3'	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:65267800-65270800	Active TSS	Gastric	stomach
42	chr11:65267800-65270800	Active TSS	Pancreas	Pancrea
43	chr11:65267800-65271000	Transcr. at gene 5' and 3'	Pancreatic Islets	Pancreatic Islet
44	chr11:65267800-65272800	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:65267800-65273200	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
46	chr11:65267800-65273400	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:65267800-65273400	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
48	chr11:65267800-65273400	Transcr. at gene 5' and 3'	NHLF	lung
49	chr11:65267800-65273600	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
50	chr11:65267800-65273600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood

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