Variant report

Variant	rs575918879
Chromosome Location	chr11:65270833-65270834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:258)
CpG islands
(count:0)
Chromatin interactive
region (count:69)
LncRNA
region (count:44)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:258 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr11:65265739-65275670	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:65263137-65276123	GM12878	blood:	n/a	n/a
3	POU2F2	chr11:65267380-65271049	GM12878	blood:	n/a	chr11:65269590-65269603
4	GTF2F1	chr11:65268940-65275318	K562	blood:	n/a	n/a
5	JUND	chr11:65267670-65275728	SK-N-SH	brain:	n/a	chr11:65268773-65268780 chr11:65269411-65269418 chr11:65268675-65268684 chr11:65268773-65268781 chr11:65268774-65268785
6	NFATC1	chr11:65264330-65275640	GM12878	blood:	n/a	n/a
7	SIN3AK20	chr11:65270348-65270998	PANC-1	pancreas:	n/a	n/a
8	REST	chr11:65270627-65270905	SK-N-SH	brain:	n/a	n/a
9	TEAD4	chr11:65264291-65275467	K562	blood:	n/a	chr11:65272376-65272385
10	USF2	chr11:65270167-65270901	K562	blood:	n/a	n/a
11	GATA3	chr11:65270418-65270848	T-47D	breast:	n/a	n/a
12	POLR2A	chr11:65264226-65275445	GM18526	blood:	n/a	n/a
13	POLR2A	chr11:65269865-65271069	HepG2	liver:	n/a	n/a
14	POLR2A	chr11:65264364-65275556	GM18951	blood:	n/a	n/a
15	TBP	chr11:65270560-65271019	GM12878	blood:	n/a	n/a
16	CEBPB	chr11:65269753-65275425	K562	blood:	n/a	chr11:65269969-65269980 chr11:65275087-65275100 chr11:65272155-65272167
17	REST	chr11:65270416-65271054	K562	blood:	n/a	n/a
18	POLR2A	chr11:65264336-65276216	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr11:65270424-65270874	Hela-S3	cervix:	n/a	n/a
20	MXI1	chr11:65265955-65275405	K562	blood:	n/a	n/a
21	POLR2A	chr11:65263707-65276561	K562	blood:	n/a	n/a
22	POLR2A	chr11:65263591-65276127	GM12878	blood:	n/a	n/a
23	HEY1	chr11:65263782-65276303	K562	blood:	n/a	chr11:65265117-65265132 chr11:65265814-65265829
24	BRCA1	chr11:65270270-65272804	H1-hESC	embryonic stem cell:	n/a	chr11:65271839-65271846
25	POLR2A	chr11:65270117-65270979	HepG2	liver:	n/a	n/a
26	POLR2A	chr11:65264531-65276415	HUVEC	blood vessel:	n/a	n/a
27	POLR2A	chr11:65264092-65275559	GM12891	blood:	n/a	n/a
28	ZNF143	chr11:65270084-65275378	K562	blood:	n/a	n/a
29	ATF2	chr11:65267481-65275471	H1-hESC	embryonic stem cell:	n/a	n/a
30	ATF2	chr11:65264270-65275525	GM12878	blood:	n/a	n/a
31	ELF1	chr11:65267297-65271099	HCT-116	colon:	n/a	chr11:65268365-65268376 chr11:65268366-65268375 chr11:65267600-65267611
32	ZBTB33	chr11:65270002-65273219	K562	blood:	n/a	n/a
33	POU2F2	chr11:65270299-65270890	GM12878	blood:	n/a	n/a
34	REST	chr11:65270025-65271057	A549	lung:	n/a	n/a
35	ZMIZ1	chr11:65264328-65275427	K562	blood:	n/a	n/a
36	KAT2A	chr11:65270205-65272175	GM12878	blood:	n/a	n/a
37	NR2F2	chr11:65267423-65271063	K562	blood:	n/a	n/a
38	JUND	chr11:65270383-65270944	A549	lung:	n/a	n/a
39	POLR2A	chr11:65264332-65276593	MCF10A-Er-Src	breast:	n/a	n/a
40	STAT5A	chr11:65267402-65275514	K562	blood:	n/a	chr11:65269024-65269036 chr11:65268086-65268095 chr11:65271728-65271737 chr11:65275165-65275176 chr11:65267921-65267930 chr11:65271269-65271277 chr11:65268382-65268393 chr11:65269696-65269704 chr11:65268087-65268096 chr11:65269018-65269030 chr11:65273912-65273920 chr11:65271727-65271736 chr11:65267922-65267931 chr11:65271556-65271568 chr11:65271725-65271739 chr11:65267919-65267933 chr11:65272939-65272951 chr11:65274221-65274233 chr11:65274738-65274750 chr11:65271417-65271424 chr11:65267922-65267945
41	POLR2A	chr11:65264125-65276206	K562	blood:	n/a	n/a
42	ZBTB33	chr11:65270354-65270869	K562	blood:	n/a	n/a
43	NRF1	chr11:65267565-65273789	H1-hESC	embryonic stem cell:	n/a	n/a
44	EP300	chr11:65270105-65271167	A549	lung:	n/a	n/a
45	SP1	chr11:65267455-65276398	A549	lung:	n/a	chr11:65274219-65274231 chr11:65268926-65268936 chr11:65271745-65271759 chr11:65271755-65271764 chr11:65269310-65269322 chr11:65274219-65274231 chr11:65271751-65271765 chr11:65268927-65268936 chr11:65268707-65268716 chr11:65272604-65272618 chr11:65268925-65268937 chr11:65271755-65271765 chr11:65274220-65274229 chr11:65271755-65271765 chr11:65269312-65269321 chr11:65274988-65274995 chr11:65274220-65274230 chr11:65268925-65268937 chr11:65274221-65274230 chr11:65271756-65271765 chr11:65269311-65269320 chr11:65274221-65274230 chr11:65271754-65271766 chr11:65268707-65268717 chr11:65271754-65271766
46	ARID3A	chr11:65266047-65275338	K562	blood:	n/a	chr11:65269298-65269314
47	CEBPD	chr11:65269833-65275577	K562	blood:	n/a	chr11:65275088-65275099
48	POLR2A	chr11:65270393-65271373	HCT-116	colon:	n/a	n/a
49	EGR1	chr11:65270405-65270916	K562	blood:	n/a	n/a
50	ZZZ3	chr11:65268163-65273605	Hela-S3	cervix:	n/a	n/a

No data

(count:69 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr11:65263786..65274103-chr11:65335962..65346813,28	MCF-7	breast:
2	chr11:65270368..65274938-chr11:65339549..65344578,6	MCF-7	breast:
3	chr11:65270598..65271155-chr14:50358897..50359406,2	Hela-S3	cervix:
4	chr11:65270266..65271115-chr6:33281054..33281950,2	Hela-S3	cervix:
5	chr11:65268214..65271270-chr6:26025584..26028816,3	K562	blood:
6	chr1:17230384..17232328-chr11:65270630..65273956,3	K562	blood:
7	chr11:65269920..65271716-chr7:104650718..104653065,2	K562	blood:
8	chr1:244816233..244816915-chr11:65270788..65271601,2	MCF-7	breast:
9	chr11:65270631..65271460-chr15:78832325..78833088,2	Hela-S3	cervix:
10	chr11:65270818..65272335-chr15:65596544..65598769,2	K562	blood:
11	chr11:65270401..65272397-chr11:65308248..65310237,2	K562	blood:
12	chr11:65270150..65270967-chr8:141466872..141467825,2	Hela-S3	cervix:
13	chr11:65270201..65271508-chr13:60970212..60971159,3	Hela-S3	cervix:
14	chr11:65270231..65271098-chr17:39844838..39845726,2	Hela-S3	cervix:
15	chr11:65270060..65272475-chr8:30012464..30015330,2	K562	blood:
16	chr11:65178877..65218546-chr11:65218612..65286191,1014	K562	blood:
17	chr11:65270524..65271210-chr5:95997450..95998003,2	Hela-S3	cervix:
18	chr11:65270769..65271658-chr14:31676250..31677136,2	Hela-S3	cervix:
19	chr11:65269977..65270967-chr11:118661579..118662123,2	Hela-S3	cervix:
20	chr11:64849186..64851415-chr11:65269391..65271691,2	K562	blood:
21	chr11:65270079..65270994-chr11:69489420..69490358,2	Hela-S3	cervix:
22	chr11:65270126..65270966-chr3:38206636..38207475,2	Hela-S3	cervix:
23	chr11:65269512..65272453-chr8:141523965..141525980,2	MCF-7	breast:
24	chr11:65270221..65271153-chr12:6982207..6982874,2	Hela-S3	cervix:
25	chr11:65171611..65173727-chr11:65270547..65272870,2	K562	blood:
26	chr1:23885494..23886432-chr11:65270671..65271665,2	Hela-S3	cervix:
27	chr11:65270602..65271307-chr19:59054849..59055798,2	Hela-S3	cervix:
28	chr11:65270290..65271856-chr22:39915323..39918030,2	K562	blood:
29	chr11:65270751..65271651-chr2:36582856..36583420,2	Hela-S3	cervix:
30	chr11:65270811..65271917-chr11:82996794..82997886,3	Hela-S3	cervix:
31	chr11:65270319..65271316-chr3:9438451..9439286,2	Hela-S3	cervix:
32	chr11:65270743..65271667-chr16:75018633..75019348,2	Hela-S3	cervix:
33	chr11:65270481..65271475-chr19:49375339..49375998,2	Hela-S3	cervix:
34	chr11:65269857..65272760-chr5:180686700..180688956,2	K562	blood:
35	chr11:65270181..65272058-chr6:26272887..26274665,2	MCF-7	breast:
36	chr11:65270737..65271507-chr17:48939297..48939874,2	Hela-S3	cervix:
37	chr11:65268418..65270966-chr6:26030658..26032363,2	K562	blood:
38	chr1:27190798..27191753-chr11:65270221..65271041,2	Hela-S3	cervix:
39	chr11:65269953..65272188-chr19:37968874..37970374,2	K562	blood:
40	chr11:65116402..65157784-chr11:65261420..65278410,154	K562	blood:
41	chr11:65269923..65272492-chr16:85833808..85835393,2	K562	blood:
42	chr11:65270753..65271412-chr12:124086119..124086943,2	Hela-S3	cervix:
43	chr11:65270674..65272222-chr19:53087826..53090244,2	K562	blood:
44	chr11:65269686..65271173-chr15:65596886..65597976,5	Hela-S3	cervix:
45	chr1:53685931..53686470-chr11:65270255..65271113,2	Hela-S3	cervix:
46	chr11:65268396..65270850-chr17:57915073..57916598,2	MCF-7	breast:
47	chr11:65269569..65272388-chr12:53844751..53846420,2	K562	blood:
48	chr11:64880257..64882171-chr11:65269190..65271279,2	MCF-7	breast:
49	chr11:65270710..65271463-chr15:74428349..74429318,2	Hela-S3	cervix:
50	chr1:59379022..59379522-chr11:65270691..65271192,2	Hela-S3	cervix:

(count:44 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LTBP3-2	chr11:65270590-65271258	NONHSAT022110
2	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
3	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
4	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
5	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
6	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
7	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
8	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
9	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
10	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
11	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
12	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
13	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
14	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
15	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
16	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
17	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
18	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
19	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
20	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
21	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
22	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
23	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
24	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
25	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
26	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
27	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
28	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
29	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
30	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
31	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
32	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
33	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
34	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
35	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
36	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
37	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
38	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
39	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
40	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
41	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
42	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
43	lnc-SCYL1-1	chr11:65270108-65271080	ENSG00000251562
44	lnc-LTBP3-2	chr11:65266959-65271093	NONHSAT022147

No data

Variant related genes	Relation type
ENSG00000270117	TF binding region
ENSG00000272173	Chromatin interaction
ENSG00000206573	Chromatin interaction
ENSG00000111364	Chromatin interaction
ENSG00000167986	Chromatin interaction
ENSG00000255234	Chromatin interaction
ENSG00000248275	Chromatin interaction
ENSG00000162384	Chromatin interaction
ENSG00000092148	Chromatin interaction
ENSG00000116141	Chromatin interaction
ENSG00000240370	Chromatin interaction
ENSG00000259818	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000237857	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000185278	Chromatin interaction
ENSG00000010626	Chromatin interaction
ENSG00000130726	Chromatin interaction
ENSG00000173442	Chromatin interaction
ENSG00000150938	Chromatin interaction
ENSG00000177508	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000172939	Chromatin interaction
ENSG00000271869	Chromatin interaction
ENSG00000083544	Chromatin interaction
ENSG00000183718	Chromatin interaction
ENSG00000128272	Chromatin interaction
ENSG00000234741	Chromatin interaction
ENSG00000087074	Chromatin interaction
ENSG00000173825	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000121644	Chromatin interaction
ENSG00000111678	Chromatin interaction
ENSG00000103091	Chromatin interaction
ENSG00000149476	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000176973	Chromatin interaction
ENSG00000110367	Chromatin interaction
ENSG00000162241	Chromatin interaction
ENSG00000268886	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000104671	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000197111	Chromatin interaction
ENSG00000255478	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000173465	Chromatin interaction
ENSG00000131143	Chromatin interaction
ENSG00000111671	Chromatin interaction
ENSG00000264910	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000104472	Chromatin interaction
ENSG00000197182	Chromatin interaction
ENSG00000041357	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000149716	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000272426	Chromatin interaction
ENSG00000137500	Chromatin interaction
ENSG00000178149	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000117318	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000260233	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000126391	Chromatin interaction
ENSG00000153113	Chromatin interaction
MAPK10	LncRNA region
CDCP1	LncRNA region
CDH1	LncRNA region
CPM	LncRNA region
HNF4G	LncRNA region
MAP2K2	LncRNA region
NNMT	LncRNA region
CSF1	LncRNA region
MCAM	LncRNA region
ABCA1	LncRNA region
ZEB2	LncRNA region
SNAI2	LncRNA region
HMMR	LncRNA region
PTBP3	LncRNA region
MIA2	LncRNA region
MAPK8	LncRNA region
RASSF6	LncRNA region
STC1	LncRNA region
ADAMTS12	LncRNA region
GPC6	LncRNA region
CXCL5	LncRNA region
CA2	LncRNA region
COL6A1	LncRNA region
LAYN	LncRNA region
PRKCE	LncRNA region
CCT4	LncRNA region
MAPK9	LncRNA region
LPHN2	LncRNA region
MAPK3	LncRNA region
DRD1	LncRNA region
LY6K	LncRNA region
ROBO1	LncRNA region
LPAR1	LncRNA region
MAP2K1	LncRNA region
BMPER	LncRNA region
CTHRC1	LncRNA region
CDH2	LncRNA region
FN1	LncRNA region
ZEB1	LncRNA region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
2	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
3	nsv541065	chr11:65117387-65271894	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	835 gene(s)	inside rSNPs	diseases
4	esv1829999	chr11:65136686-65343124	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	963 gene(s)	inside rSNPs	diseases
5	nsv897717	chr11:65140209-65278461	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	942 gene(s)	inside rSNPs	diseases
6	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
7	nsv541066	chr11:65142779-65271894	Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	833 gene(s)	inside rSNPs	diseases
8	nsv541067	chr11:65142779-65313799	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	950 gene(s)	inside rSNPs	diseases
9	nsv541068	chr11:65142779-65331136	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	953 gene(s)	inside rSNPs	diseases
10	nsv541069	chr11:65142779-65368787	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	965 gene(s)	inside rSNPs	diseases
11	nsv541070	chr11:65142779-65397058	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	972 gene(s)	inside rSNPs	diseases
12	nsv541071	chr11:65142779-65429352	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
13	nsv897719	chr11:65157094-65335705	Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
14	nsv541072	chr11:65171202-65313799	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	946 gene(s)	inside rSNPs	diseases
15	nsv541073	chr11:65171202-65331136	Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
16	nsv541074	chr11:65171202-65368787	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	961 gene(s)	inside rSNPs	diseases
17	nsv541075	chr11:65210592-65331136	Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	620 gene(s)	inside rSNPs	diseases
18	nsv541076	chr11:65210592-65397058	Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	645 gene(s)	inside rSNPs	diseases
19	nsv897720	chr11:65213434-65445950	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	665 gene(s)	inside rSNPs	diseases
20	nsv555210	chr11:65266169-65287251	Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	574 gene(s)	inside rSNPs	diseases
21	esv20791	chr11:65266587-65273530	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	516 gene(s)	inside rSNPs	diseases
22	nsv555211	chr11:65268469-65272325	Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	344 gene(s)	inside rSNPs	diseases
23	nsv820139	chr11:65270215-65271374	Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	197 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65263600-65271600	Active TSS	Right Ventricle	heart
2	chr11:65264600-65271800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:65264600-65272800	Active TSS	Psoas Muscle	Psoas
4	chr11:65264800-65272200	Active TSS	Fetal Intestine Small	intestine
5	chr11:65265400-65272000	ZNF genes & repeats	Fetal Brain Male	brain
6	chr11:65266800-65272400	ZNF genes & repeats	Fetal Heart	heart
7	chr11:65266800-65274000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:65266800-65274200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:65267000-65273600	Transcr. at gene 5' and 3'	Fetal Lung	lung
10	chr11:65267000-65273800	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:65267000-65273800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
12	chr11:65267000-65274200	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
13	chr11:65267200-65273600	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:65267200-65273800	Transcr. at gene 5' and 3'	K562	blood
15	chr11:65267200-65274000	Transcr. at gene 5' and 3'	Dnd41	blood
16	chr11:65267200-65274200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:65267400-65273800	Transcr. at gene 5' and 3'	NHEK	skin
18	chr11:65267400-65273800	Transcr. at gene 5' and 3'	Osteobl	bone
19	chr11:65267400-65274000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:65267400-65274200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:65267400-65274200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
22	chr11:65267400-65274400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
23	chr11:65267600-65272200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells	blood
24	chr11:65267600-65273400	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
25	chr11:65267600-65273600	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
26	chr11:65267600-65273800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
27	chr11:65267600-65273800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:65267600-65273800	Transcr. at gene 5' and 3'	HMEC	breast
29	chr11:65267600-65274000	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
30	chr11:65267600-65274000	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
31	chr11:65267600-65274200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
32	chr11:65267600-65274200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
33	chr11:65267600-65274400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:65267600-65274400	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
35	chr11:65267800-65271000	Transcr. at gene 5' and 3'	Pancreatic Islets	Pancreatic Islet
36	chr11:65267800-65272800	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:65267800-65273200	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
38	chr11:65267800-65273400	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:65267800-65273400	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
40	chr11:65267800-65273400	Transcr. at gene 5' and 3'	NHLF	lung
41	chr11:65267800-65273600	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
42	chr11:65267800-65273600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:65267800-65273800	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
44	chr11:65267800-65273800	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
45	chr11:65267800-65273800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
46	chr11:65267800-65274000	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
47	chr11:65267800-65274000	Transcr. at gene 5' and 3'	HSMM	muscle
48	chr11:65267800-65274200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
49	chr11:65267800-65274200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
50	chr11:65267800-65274200	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links