Variant report

Variant	nsv822716
Chromosome Location	chr4:124938146-124938615
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550619549	chr4:124938159-124938160	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs114829366	chr4:124938163-124938164	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs532233724	chr4:124938176-124938177	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs34042194	chr4:124938212-124938213	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs78554222	chr4:124938215-124938216	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs150523810	chr4:124938220-124938221	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs35795102	chr4:124938225-124938226	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs538097907	chr4:124938227-124938228	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs556293112	chr4:124938231-124938232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs139526849	chr4:124938292-124938293	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs149662476	chr4:124938318-124938319	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs34947044	chr4:124938368-124938369	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs187925855	chr4:124938380-124938381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs34793470	chr4:124938396-124938397	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs577202684	chr4:124938430-124938431	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs539817369	chr4:124938450-124938451	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs552889984	chr4:124938459-124938460	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs192356753	chr4:124938481-124938482	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs13145600	chr4:124938502-124938503	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs551092794	chr4:124938537-124938538	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs541673869	chr4:124938549-124938550	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs13145647	chr4:124938600-124938601	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs13145840	chr4:124938608-124938609	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs544006111	chr4:124938611-124938612	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Olfactory neuroblastoma	18408657	CNVD
Developmental delay	21147756	CNVD
Renal cell carcinoma	18765545	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myelofibrosis	22110671	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Hodgkin''s lymphoma	17606441	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124935200-124938400	Weak transcription	NHDF-Ad	bronchial
2	chr4:124935400-124941400	Weak transcription	Aorta	Aorta
3	chr4:124935600-124939800	Weak transcription	Esophagus	oesophagus
4	chr4:124937000-124940000	Enhancers	Stomach Mucosa	stomach
5	chr4:124937200-124938400	Enhancers	Fetal Intestine Small	intestine
6	chr4:124938000-124938800	Enhancers	Fetal Intestine Large	intestine
7	chr4:124938200-124938400	Enhancers	Fetal Lung	lung
8	chr4:124938200-124938800	Enhancers	NHLF	lung
9	chr4:124938400-124938600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:124938400-124938600	Enhancers	Psoas Muscle	Psoas
11	chr4:124938400-124938600	Enhancers	Hela-S3	cervix
12	chr4:124938400-124938800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:124938400-124938800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:124938400-124938800	Active TSS	Fetal Brain Male	brain
15	chr4:124938400-124938800	Flanking Active TSS	Fetal Lung	lung
16	chr4:124938400-124938800	Enhancers	Fetal Muscle Leg	muscle
17	chr4:124938400-124939000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:124938400-124939800	Weak transcription	Fetal Intestine Small	intestine
19	chr4:124938400-124940200	Enhancers	NHDF-Ad	bronchial
20	chr4:124938600-124938800	Enhancers	HSMMtube	muscle
21	chr4:124938600-124939000	Enhancers	Fetal Heart	heart
22	chr4:124938600-124939600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:124938600-124939800	Weak transcription	Hela-S3	cervix

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