Variant report

Variant	nsv823397
Chromosome Location	chr6:1603867-1622264
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1122)
CpG islands
(count:3608)
Chromatin interactive
region (count:76)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:3)

(count:1122 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:1604693-1604875	HepG2	liver:	n/a	n/a
2	BACH1	chr6:1614087-1614865	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr6:1619401-1619601	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr6:1617779-1617848	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr6:1615087-1615984	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr6:1604319-1604785	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr6:1610104-1610166	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr6:1620488-1620693	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr6:1606771-1606935	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr6:1607320-1608188	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr6:1620969-1621286	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr6:1605311-1605633	H1-hESC	embryonic stem cell:	n/a	n/a
13	BCLAF1	chr6:1604513-1605000	GM12878	blood:	n/a	n/a
14	BHLHE40	chr6:1615036-1615301	GM12878	blood:	n/a	n/a
15	BHLHE40	chr6:1604608-1604823	K562	blood:	n/a	n/a
16	BRCA1	chr6:1609984-1610210	Hela-S3	cervix:	n/a	n/a
17	BRCA1	chr6:1611004-1611154	Hela-S3	cervix:	n/a	n/a
18	BRCA1	chr6:1614115-1614575	Hela-S3	cervix:	n/a	n/a
19	BRCA1	chr6:1614129-1614341	H1-hESC	embryonic stem cell:	n/a	n/a
20	BRCA1	chr6:1604710-1604771	H1-hESC	embryonic stem cell:	n/a	n/a
21	BRCA1	chr6:1604586-1604860	Hela-S3	cervix:	n/a	n/a
22	CCNT2	chr6:1612051-1612251	K562	blood:	n/a	n/a
23	CCNT2	chr6:1604583-1604911	K562	blood:	n/a	n/a
24	CEBPB	chr6:1604659-1604858	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr6:1607710-1608099	HepG2	liver:	n/a	chr6:1607995-1608008 chr6:1607997-1608008 chr6:1607995-1608006
26	CEBPB	chr6:1612221-1612392	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr6:1613979-1614222	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr6:1609988-1610319	Hela-S3	cervix:	n/a	n/a
29	CEBPB	chr6:1604680-1604690	H1-hESC	embryonic stem cell:	n/a	n/a
30	CEBPB	chr6:1607752-1608182	HepG2	liver:	n/a	chr6:1607995-1608008 chr6:1607997-1608008 chr6:1607995-1608006
31	CEBPB	chr6:1607741-1608142	MCF-7	breast:	n/a	chr6:1607995-1608008 chr6:1607997-1608008 chr6:1607995-1608006
32	CEBPB	chr6:1607804-1608169	HepG2	liver:	n/a	chr6:1607995-1608008 chr6:1607997-1608008 chr6:1607995-1608006
33	CEBPB	chr6:1607758-1608100	HepG2	liver:	n/a	chr6:1607995-1608008 chr6:1607997-1608008 chr6:1607995-1608006
34	CEBPB	chr6:1607749-1608189	H1-hESC	embryonic stem cell:	n/a	chr6:1607995-1608008 chr6:1607997-1608008 chr6:1607995-1608006
35	CEBPB	chr6:1607851-1608117	K562	blood:	n/a	chr6:1607995-1608008 chr6:1607997-1608008 chr6:1607995-1608006
36	CEBPD	chr6:1607838-1608075	HepG2	liver:	n/a	n/a
37	CHD1	chr6:1615305-1615711	H1-hESC	embryonic stem cell:	n/a	chr6:1615477-1615487
38	CHD1	chr6:1607551-1607854	H1-hESC	embryonic stem cell:	n/a	n/a
39	CHD1	chr6:1604411-1605168	IMR90	lung:	n/a	n/a
40	CHD1	chr6:1608201-1608401	H1-hESC	embryonic stem cell:	n/a	n/a
41	CHD1	chr6:1620353-1620431	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD1	chr6:1604598-1604777	H1-hESC	embryonic stem cell:	n/a	n/a
43	CHD2	chr6:1609365-1610382	Hela-S3	cervix:	n/a	n/a
44	CHD2	chr6:1614077-1614456	H1-hESC	embryonic stem cell:	n/a	n/a
45	CHD2	chr6:1604710-1604939	HepG2	liver:	n/a	n/a
46	CHD2	chr6:1612215-1612260	HepG2	liver:	n/a	n/a
47	CHD2	chr6:1613986-1614644	Hela-S3	cervix:	n/a	n/a
48	CHD2	chr6:1604753-1604806	H1-hESC	embryonic stem cell:	n/a	n/a
49	CHD2	chr6:1606833-1608130	H1-hESC	embryonic stem cell:	n/a	n/a
50	CHD2	chr6:1612123-1612307	Hela-S3	cervix:	n/a	n/a

(count:3608 , 50 per page) page: 1 2 3 4 5 6 7 ... 73

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:1619445-1619495	HRPEpiC	eye:	n/a
2	chr6:1610102-1610152	CMK	blood:	n/a
3	chr6:1609827-1609877	SAEC	small airway:	n/a
4	chr6:1606394-1606444	NT2-D1	testis:	n/a
5	chr6:1621807-1621857	HCF	heart:	n/a
6	chr6:1608977-1609027	AG04450	lung:	fetal
7	chr6:1605352-1605402	Jurkat	blood:	n/a
8	chr6:1619162-1619212	HEEpiC	esophagus:	n/a
9	chr6:1616792-1616842	MCF-7	breast:	n/a
10	chr6:1619445-1619495	HRPEpiC	eye:	n/a
11	chr6:1610102-1610152	CMK	blood:	n/a
12	chr6:1609827-1609877	SAEC	small airway:	n/a
13	chr6:1606394-1606444	NT2-D1	testis:	n/a
14	chr6:1621807-1621857	HCF	heart:	n/a
15	chr6:1608977-1609027	AG04450	lung:	fetal
16	chr6:1605352-1605402	Jurkat	blood:	n/a
17	chr6:1619162-1619212	HEEpiC	esophagus:	n/a
18	chr6:1616792-1616842	MCF-7	breast:	n/a
19	chr6:1610673-1610723	SAEC	small airway:	n/a
20	chr6:1610197-1610247	Hepatocyte	liver:	n/a
21	chr6:1619162-1619212	GM19239	blood:	n/a
22	chr6:1607507-1607557	SAEC	small airway:	n/a
23	chr6:1608107-1608157	HRE	kidney:	n/a
24	chr6:1604990-1605040	PANC-1	pancreas:	n/a
25	chr6:1619445-1619495	NH-A	brain:	n/a
26	chr6:1606348-1606398	NHDF-neo	bronchial:	n/a
27	chr6:1606383-1606433	MCF-7	breast:	n/a
28	chr6:1611850-1611900	AG10803	skin:	n/a
29	chr6:1619134-1619184	GM12891	blood:	n/a
30	chr6:1619134-1619184	HCF	heart:	n/a
31	chr6:1619162-1619212	IMR90	lung:	fetal
32	chr6:1604140-1604190	SKMC	muscle:	n/a
33	chr6:1616792-1616842	HMEC	breast:	n/a
34	chr6:1606028-1606078	NH-A	brain:	n/a
35	chr6:1604134-1604184	ECC-1	luminal epithelium:	n/a
36	chr6:1617619-1617669	PANC-1	pancreas:	n/a
37	chr6:1609223-1609273	HEK293	kidney:	embryo
38	chr6:1604990-1605040	SK-N-SH	brain:	n/a
39	chr6:1604134-1604184	AoSMC	blood vessel:	n/a
40	chr6:1604990-1605040	LNCaP	prostate:	n/a
41	chr6:1616792-1616842	PFSK-1	brain:	n/a
42	chr6:1621807-1621857	AG04450	lung:	fetal
43	chr6:1612301-1612351	AG09319	gingival:	n/a
44	chr6:1612589-1612639	GM06990	blood:	n/a
45	chr6:1618814-1618864	IMR90	lung:	fetal
46	chr6:1606348-1606398	GM12891	blood:	n/a
47	chr6:1604212-1604262	HL-60	blood:	n/a
48	chr6:1605913-1605963	Caco-2	colon:	n/a
49	chr6:1607922-1607972	HCPEpiC	choroid plexus:	n/a
50	chr6:1604697-1604747	ProgFib	skin:	n/a

(count:76 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:1621462..1623785-chr6:1630687..1632376,2	MCF-7	breast:
2	chr6:1599462..1604402-chr6:1608512..1612736,5	MCF-7	breast:
3	chr6:1609667..1610499-chr6:2634221..2635016,2	Hela-S3	cervix:
4	chr6:1612762..1614490-chr6:1684651..1686337,2	MCF-7	breast:
5	chr6:1612605..1614594-chr6:1617750..1620318,2	K562	blood:
6	chr6:1604178..1605147-chr6:1698461..1699421,2	MCF-7	breast:
7	chr12:52445575..52446281-chr6:1609760..1610319,2	Hela-S3	cervix:
8	chr19:39900304..39901200-chr6:1610096..1610828,2	Hela-S3	cervix:
9	chr6:1613601..1616757-chr6:1636130..1638960,3	MCF-7	breast:
10	chr6:1608640..1610320-chr6:2764921..2767231,2	MCF-7	breast:
11	chr6:1606456..1608668-chr6:2173309..2175661,2	MCF-7	breast:
12	chr17:41438452..41439029-chr6:1609999..1610656,2	Hela-S3	cervix:
13	chr6:1607577..1610037-chr6:2107747..2109346,3	MCF-7	breast:
14	chr6:1608889..1609545-chr6:1641330..1642058,3	MCF-7	breast:
15	chr5:112257084..112257659-chr6:1609600..1610235,2	Hela-S3	cervix:
16	chr6:1608353..1611335-chr6:2245492..2248463,2	MCF-7	breast:
17	chr6:1610083..1610592-chr8:77593010..77593516,2	HCT-116	colon:
18	chr11:67887768..67889272-chr6:1609533..1611427,2	MCF-7	breast:
19	chr6:1613675..1614411-chr6:1641501..1642080,3	MCF-7	breast:
20	chr6:1614281..1616575-chr6:1641666..1643678,2	MCF-7	breast:
21	chr6:1616379..1619156-chr6:2096704..2099403,2	MCF-7	breast:
22	chr6:1604279..1605453-chr6:2196023..2197192,6	K562	blood:
23	chr6:1604831..1605344-chr6:1641211..1642147,2	MCF-7	breast:
24	chr6:1606529..1608370-chr6:1661699..1664667,2	MCF-7	breast:
25	chr6:1608295..1609995-chr6:2876542..2878231,2	MCF-7	breast:
26	chr6:1607121..1609914-chr6:1613223..1615033,2	K562	blood:
27	chr6:1613523..1614289-chr6:1838606..1839498,2	MCF-7	breast:
28	chr21:27542375..27543109-chr6:1610318..1611312,2	Hela-S3	cervix:
29	chr6:1610715..1613985-chr6:2196585..2199138,3	MCF-7	breast:
30	chr6:1619912..1621800-chr6:1626209..1627761,2	K562	blood:
31	chr15:72523069..72523704-chr6:1609701..1610266,2	HCT-116	colon:
32	chr1:183441719..183444081-chr6:1612481..1614965,2	MCF-7	breast:
33	chr6:1612577..1614591-chr6:1838798..1840944,2	MCF-7	breast:
34	chr6:1612605..1614594-chr6:1617750..1620318,2	K562	blood:
35	chr6:1613541..1614598-chr6:1641560..1642153,3	MCF-7	breast:
36	chr6:1612565..1615275-chr6:1837590..1839107,2	MCF-7	breast:
37	chr6:1604389..1605339-chr6:2037539..2038714,6	MCF-7	breast:
38	chr6:1604255..1605544-chr6:2104014..2105193,5	K562	blood:
39	chr6:1615844..1618039-chr6:1678564..1681319,2	MCF-7	breast:
40	chr14:100658739..100659418-chr6:1609951..1610630,2	Hela-S3	cervix:
41	chr6:1617838..1620812-chr6:1634343..1637203,2	K562	blood:
42	chr6:1612642..1614747-chr6:1828037..1830665,2	MCF-7	breast:
43	chr6:1604456..1604957-chr6:2104229..2104835,2	MCF-7	breast:
44	chr6:1607774..1610426-chr6:2098410..2101344,2	MCF-7	breast:
45	chr6:1603725..1606000-chr6:2194697..2196437,2	MCF-7	breast:
46	chr6:1612951..1615735-chr6:3066934..3068619,2	MCF-7	breast:
47	chr6:1598107..1600931-chr6:1602423..1604721,2	MCF-7	breast:
48	chr6:1609612..1610158-chr7:22862032..22862665,2	NB4	blood:
49	chr6:1607121..1609914-chr6:1613223..1615033,2	K562	blood:
50	chr6:1607913..1609589-chr6:2471423..2474239,2	MCF-7	breast:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXC1-1	chr6:1605724-1606034	XLOC_005125
2	lnc-FOXC1-4	chr6:1608270-1608879	NONHSAT106523
3	lnc-FOXC1-1	chr6:1606251-1607583	NONHSAT106530
4	lnc-GMDS-6	chr6:1603265-1608466	NONHSAT106529
5	lnc-GMDS-6	chr6:1605557-1605779	NONHSAT106520
6	lnc-GMDS-6	chr6:1610339-1610832	NONHSAT106529
7	lnc-GMDS-6	chr6:1605088-1607351	NONHSAT106531
8	lnc-FOXC1-1	chr6:1604457-1604593	NONHSAT106530
9	lnc-GMDS-6	chr6:1605756-1606556	NONHSAT106519
10	lnc-FOXC1-3	chr6:1612577-1614127	NONHSAT106538
11	lnc-GMDS-6	chr6:1612000-1612105	NONHSAT106529
12	lnc-FOXC1-1	chr6:1606251-1607305	XLOC_005125

No data

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	FOXC1	hsa-miR-204-5p	chr6:1613652-1613673
2	FOXC1	hsa-miR-204-5p	chr6:1612948-1612968
3	FOXC1	hsa-miR-204-5p	chr6:1612961-1612968

Variant related genes	Relation type
FOXC1	TF binding region
FOXC1	CpG island
ENSG00000132475	chromatin interactions
ENSG00000129625	chromatin interactions
ENSG00000142192	chromatin interactions
ENSG00000204947	chromatin interactions
ENSG00000158796	chromatin interactions
ENSG00000145623	chromatin interactions
ENSG00000116698	chromatin interactions
ENSG00000141448	chromatin interactions
ENSG00000250903	chromatin interactions
ENSG00000266559	chromatin interactions
ENSG00000067225	chromatin interactions
ENSG00000230438	chromatin interactions
ENSG00000091656	chromatin interactions
ENSG00000172270	chromatin interactions
ENSG00000164385	chromatin interactions
ENSG00000112699	chromatin interactions
ENSG00000110721	chromatin interactions
ENSG00000196683	chromatin interactions
ENSG00000124535	chromatin interactions
ENSG00000054598	chromatin interactions
ENSG00000267751	chromatin interactions
ENSG00000197024	chromatin interactions
ENSG00000240877	chromatin interactions
ENSG00000249740	chromatin interactions

Extended variants
information (count: 645 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:645 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184394390	chr6:1603892-1603893	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
2	rs188428263	chr6:1603995-1603996	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs541700088	chr6:1604007-1604008	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
4	rs12665643	chr6:1604026-1604027	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs149441113	chr6:1604039-1604040	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs144675802	chr6:1604158-1604159	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs200900082	chr6:1604182-1604183	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs553340485	chr6:1604213-1604214	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs543566957	chr6:1604225-1604226	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs181105160	chr6:1604329-1604330	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
11	rs529328222	chr6:1604420-1604421	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs549247130	chr6:1604422-1604423	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs559691688	chr6:1604439-1604440	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs114593858	chr6:1604446-1604447	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs35493827	chr6:1604452-1604453	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs570614845	chr6:1604460-1604461	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs539759882	chr6:1604476-1604477	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs70989190	chr6:1604604-1604605	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs549973869	chr6:1604683-1604684	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs569893078	chr6:1604697-1604698	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs535526078	chr6:1604705-1604706	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs555209276	chr6:1604803-1604804	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs2745595	chr6:1604845-1604846	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs534273571	chr6:1604936-1604937	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs557741631	chr6:1604954-1604955	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs577891731	chr6:1604955-1604956	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs543737227	chr6:1605017-1605018	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs372684838	chr6:1605049-1605050	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs557117961	chr6:1605108-1605109	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs78699237	chr6:1605122-1605123	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs543105939	chr6:1605136-1605137	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs559542540	chr6:1605162-1605163	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs528595690	chr6:1605168-1605169	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs545041035	chr6:1605184-1605185	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs565301682	chr6:1605185-1605186	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs533243084	chr6:1605215-1605216	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs56210598	chr6:1605241-1605242	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs73406890	chr6:1605258-1605259	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs376527399	chr6:1605274-1605275	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs549162056	chr6:1605284-1605285	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs565595218	chr6:1605299-1605300	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs77438928	chr6:1605445-1605446	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs185598188	chr6:1605470-1605471	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs12199089	chr6:1605504-1605505	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs537341793	chr6:1605506-1605507	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs557281057	chr6:1605529-1605530	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs573999446	chr6:1605547-1605548	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs188892640	chr6:1605548-1605549	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs553547691	chr6:1605580-1605581	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs112779086	chr6:1605630-1605631	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	20164919	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1687 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1596600-1604800	Weak transcription	Gastric	stomach
2	chr6:1596800-1604400	Weak transcription	Right Atrium	heart
3	chr6:1598200-1604200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:1598200-1604200	Weak transcription	A549	lung
5	chr6:1598600-1604400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:1598800-1604400	Weak transcription	Hela-S3	cervix
7	chr6:1599000-1604400	Weak transcription	HMEC	breast
8	chr6:1602600-1604200	Weak transcription	Aorta	Aorta
9	chr6:1604000-1604200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:1604000-1604200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:1604000-1604200	Flanking Bivalent TSS/Enh	NHEK	skin
12	chr6:1604000-1604400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr6:1604000-1604400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:1604000-1604400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr6:1604000-1604400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:1604000-1604400	Bivalent Enhancer	Colonic Mucosa	Colon
17	chr6:1604000-1604400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
18	chr6:1604000-1604400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
19	chr6:1604000-1604600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
20	chr6:1604000-1604600	Bivalent Enhancer	Fetal Heart	heart
21	chr6:1604000-1604600	Flanking Bivalent TSS/Enh	HepG2	liver
22	chr6:1604000-1604800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:1604000-1604800	Enhancers	Esophagus	oesophagus
24	chr6:1604000-1605200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:1604000-1605800	Bivalent Enhancer	Fetal Brain Male	brain
26	chr6:1604200-1604400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:1604200-1604400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr6:1604200-1604400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:1604200-1604400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:1604200-1604400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:1604200-1604400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr6:1604200-1604400	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr6:1604200-1604400	Flanking Active TSS	A549	lung
34	chr6:1604200-1604400	Active TSS	HUVEC	blood vessel
35	chr6:1604200-1604400	Bivalent Enhancer	NHEK	skin
36	chr6:1604200-1604600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr6:1604200-1604600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:1604200-1604800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:1604200-1605200	Bivalent/Poised TSS	Osteobl	bone
40	chr6:1604200-1605800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr6:1604200-1606000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:1604200-1610800	Active TSS	Aorta	Aorta
43	chr6:1604400-1604600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
44	chr6:1604400-1604600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:1604400-1604600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:1604400-1604600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:1604400-1604600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
48	chr6:1604400-1604600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:1604400-1604600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:1604400-1604600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose

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