Variant report

Variant	nsv824016
Chromosome Location	chr7:15656034-15656619
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10261835	chr7:15656069-15656070	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs147605911	chr7:15656090-15656091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs10246570	chr7:15656102-15656103	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs7788980	chr7:15656187-15656188	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs187070459	chr7:15656216-15656217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs569824289	chr7:15656240-15656241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs111706595	chr7:15656247-15656248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs572400887	chr7:15656254-15656255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs73298595	chr7:15656266-15656267	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs562047605	chr7:15656288-15656289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs552251274	chr7:15656294-15656295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs118111792	chr7:15656305-15656306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs530954208	chr7:15656336-15656337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs534890988	chr7:15656345-15656346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs140820825	chr7:15656390-15656391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs7793128	chr7:15656450-15656451	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs150174242	chr7:15656476-15656477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs192306562	chr7:15656506-15656507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs576101396	chr7:15656526-15656527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs17168904	chr7:15656533-15656534	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs558351458	chr7:15656535-15656536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs78176471	chr7:15656562-15656563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs540839693	chr7:15656581-15656582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7793310	chr7:15656606-15656607	Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs7812247	chr7:15656609-15656610	Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15640000-15662400	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:15645400-15668200	Weak transcription	Right Ventricle	heart
4	chr7:15647600-15662400	Weak transcription	Left Ventricle	heart
5	chr7:15647800-15668000	Weak transcription	Fetal Stomach	stomach
6	chr7:15648000-15659800	Weak transcription	NHDF-Ad	bronchial
7	chr7:15648000-15664000	Weak transcription	Osteobl	bone
8	chr7:15652000-15683400	Weak transcription	Adipose Nuclei	Adipose
9	chr7:15652400-15656600	Weak transcription	Fetal Lung	lung
10	chr7:15656600-15657800	Genic enhancers	Fetal Lung	lung

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