Variant report

Variant	rs10246570
Chromosome Location	chr7:15656102-15656103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10224510	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10228856	0.87[ASN][1000 genomes]
rs10240218	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10241878	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10777	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10950569	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1155150	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11770155	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11982464	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11982492	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12056299	0.87[ASN][1000 genomes]
rs12666514	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544409	0.93[ASN][1000 genomes]
rs2057742	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2107268	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2389537	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2389538	0.87[ASN][1000 genomes]
rs3801419	0.88[ASN][1000 genomes]
rs3801421	0.87[ASN][1000 genomes]
rs4721449	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6461192	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6461193	0.93[ASN][1000 genomes]
rs6461195	0.87[ASN][1000 genomes]
rs6461200	0.87[ASN][1000 genomes]
rs6942444	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6945762	0.83[ASN][1000 genomes]
rs6947658	0.85[ASN][1000 genomes]
rs6969225	0.85[ASN][1000 genomes]
rs714657	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs714658	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7458065	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7786092	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7788333	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7807669	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs917437	0.87[ASN][1000 genomes]
rs966469	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs978993	0.88[ASN][1000 genomes]
rs981597	0.87[ASN][1000 genomes]
rs984954	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv1018250	chr7:15648861-15667882	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv824016	chr7:15656034-15656619	Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15640000-15662400	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:15645400-15668200	Weak transcription	Right Ventricle	heart
4	chr7:15647600-15662400	Weak transcription	Left Ventricle	heart
5	chr7:15647800-15668000	Weak transcription	Fetal Stomach	stomach
6	chr7:15648000-15659800	Weak transcription	NHDF-Ad	bronchial
7	chr7:15648000-15664000	Weak transcription	Osteobl	bone
8	chr7:15652000-15683400	Weak transcription	Adipose Nuclei	Adipose
9	chr7:15652400-15656600	Weak transcription	Fetal Lung	lung

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