Variant report

Variant	rs4721449
Chromosome Location	chr7:15629623-15629624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10224510	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10228856	0.83[ASN][1000 genomes]
rs10240218	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10241878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246570	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10777	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10950569	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950570	0.84[ASN][1000 genomes]
rs10950571	0.84[ASN][1000 genomes]
rs1155147	0.84[ASN][1000 genomes]
rs1155148	0.84[ASN][1000 genomes]
rs1155149	0.84[ASN][1000 genomes]
rs1155150	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763320	0.82[EUR][1000 genomes]
rs11770155	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982464	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11982492	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983255	0.81[ASN][1000 genomes]
rs12056299	0.83[ASN][1000 genomes]
rs12538570	0.84[ASN][1000 genomes]
rs12538628	0.84[ASN][1000 genomes]
rs12666514	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1544409	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057742	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057743	0.84[ASN][1000 genomes]
rs2079190	0.84[ASN][1000 genomes]
rs2107268	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2389537	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2389538	0.83[ASN][1000 genomes]
rs2892793	0.84[ASN][1000 genomes]
rs35807172	0.84[ASN][1000 genomes]
rs3801419	0.85[ASN][1000 genomes]
rs3801421	0.83[ASN][1000 genomes]
rs4721448	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62438999	0.84[ASN][1000 genomes]
rs6461192	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461193	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461195	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6461200	0.83[ASN][1000 genomes]
rs67240818	0.84[ASN][1000 genomes]
rs6942444	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947658	0.82[ASN][1000 genomes]
rs6969225	0.82[ASN][1000 genomes]
rs714657	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714658	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7458065	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780240	0.81[AMR][1000 genomes]
rs7786092	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7788333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807669	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917437	0.83[ASN][1000 genomes]
rs9648205	0.84[ASN][1000 genomes]
rs966469	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978993	0.85[ASN][1000 genomes]
rs981597	0.83[ASN][1000 genomes]
rs984954	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv606299	chr7:15603853-15637887	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
5	esv3361134	chr7:15629540-15629959	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15624800-15630000	Weak transcription	Fetal Lung	lung

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