Variant report

Variant	rs9648205
Chromosome Location	chr7:15642460-15642461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10240218	0.81[ASN][1000 genomes]
rs10241878	0.84[ASN][1000 genomes]
rs10777	0.81[ASN][1000 genomes]
rs10950569	0.84[ASN][1000 genomes]
rs10950570	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950571	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155147	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155148	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155149	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155150	0.84[ASN][1000 genomes]
rs11770155	0.84[ASN][1000 genomes]
rs11982492	0.84[ASN][1000 genomes]
rs11983255	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12538570	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538628	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666514	0.81[ASN][1000 genomes]
rs1544409	0.84[ASN][1000 genomes]
rs1859269	0.97[EUR][1000 genomes]
rs1859271	0.97[EUR][1000 genomes]
rs2057742	0.84[ASN][1000 genomes]
rs2057743	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079190	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079191	0.96[EUR][1000 genomes]
rs2107268	0.82[ASN][1000 genomes]
rs2189447	0.98[EUR][1000 genomes]
rs2389537	0.81[ASN][1000 genomes]
rs2892793	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807172	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721449	0.84[ASN][1000 genomes]
rs62438998	0.94[EUR][1000 genomes]
rs62438999	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62439000	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6461192	0.84[ASN][1000 genomes]
rs6461193	0.84[ASN][1000 genomes]
rs6461194	0.95[EUR][1000 genomes]
rs67240818	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942444	0.84[ASN][1000 genomes]
rs6946852	0.98[EUR][1000 genomes]
rs6964578	0.95[EUR][1000 genomes]
rs714657	0.84[ASN][1000 genomes]
rs714658	0.82[ASN][1000 genomes]
rs7458065	0.84[ASN][1000 genomes]
rs7776567	0.97[EUR][1000 genomes]
rs7786092	0.81[ASN][1000 genomes]
rs7786884	0.83[ASN][1000 genomes]
rs7788333	0.84[ASN][1000 genomes]
rs7807669	0.84[ASN][1000 genomes]
rs966469	0.84[ASN][1000 genomes]
rs966470	0.97[EUR][1000 genomes]
rs984954	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv464392	chr7:15642053-15654614	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv606310	chr7:15642053-15654614	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15630200-15648800	Weak transcription	Fetal Lung	lung
2	chr7:15640000-15651200	Weak transcription	Adipose Nuclei	Adipose
3	chr7:15640000-15662400	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr7:15641800-15643000	Enhancers	Fetal Heart	heart
6	chr7:15642000-15643400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:15642000-15643400	Enhancers	NHDF-Ad	bronchial

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