Variant report

Variant	nsv824968
Chromosome Location	chr9:86632215-86635155
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562723234	chr9:86632317-86632318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530267235	chr9:86632384-86632385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs138582329	chr9:86632455-86632456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs548386351	chr9:86632499-86632500	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs555528122	chr9:86632577-86632578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs566956891	chr9:86632642-86632643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs533898335	chr9:86632682-86632683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs552555365	chr9:86632712-86632713	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs12004439	chr9:86632714-86632715	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs538110753	chr9:86632722-86632723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs371632192	chr9:86632723-86632724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs12006540	chr9:86632731-86632732	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs12004444	chr9:86632743-86632744	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs370380862	chr9:86632790-86632791	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Urothelial cell carcinoma	18451213	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Renal cell carcinoma	18765545	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86596400-86632400	Weak transcription	Spleen	Spleen
2	chr9:86632400-86632600	Enhancers	Spleen	Spleen
3	chr9:86632400-86632800	Enhancers	Lung	lung

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