Variant report

Variant	rs12004439
Chromosome Location	chr9:86632714-86632715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10780639	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780640	0.81[AMR][1000 genomes]
rs10868077	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12551039	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs177042	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs296891	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs296892	0.82[EUR][1000 genomes]
rs4877814	0.81[AMR][1000 genomes]
rs4877815	0.81[AMR][1000 genomes]
rs5018100	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6559754	0.85[AMR][1000 genomes]
rs6559756	0.81[AMR][1000 genomes]
rs7020841	0.82[AMR][1000 genomes]
rs7021189	0.81[EUR][1000 genomes]
rs7045008	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7864367	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7875011	0.81[EUR][1000 genomes]
rs7875242	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs796000	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs796001	0.82[EUR][1000 genomes]
rs796002	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv3328820	chr9:86613612-86634313	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv614762	chr9:86625243-86700593	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv824968	chr9:86632215-86635155	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86632400-86632800	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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