Variant report

Variant	rs4877814
Chromosome Location	chr9:86623253-86623254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86607109..86609846-chr9:86622716..86624792,2	MCF-7	breast:
2	chr9:86621080..86624737-chr9:86626977..86631058,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202523	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10124390	0.95[CHB][hapmap]
rs10780639	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10780640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868071	0.80[YRI][hapmap]
rs10868077	0.95[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10868080	0.82[AFR][1000 genomes]
rs11140340	0.95[JPT][hapmap]
rs12004439	0.81[AMR][1000 genomes]
rs12006540	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12551039	0.95[CHB][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13296528	0.81[YRI][hapmap]
rs1572030	0.95[CHB][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs1572031	0.83[CHB][hapmap]
rs177042	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1831757	0.81[YRI][hapmap]
rs1982151	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs2065516	0.83[CHB][hapmap]
rs2780103	0.82[YRI][hapmap]
rs296885	0.83[CHB][hapmap]
rs296887	0.90[YRI][hapmap]
rs296888	0.86[YRI][hapmap]
rs296889	0.89[YRI][hapmap]
rs296890	0.90[YRI][hapmap]
rs296891	0.95[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs296892	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs296893	0.84[YRI][hapmap]
rs4147132	0.82[YRI][hapmap]
rs4535826	0.82[YRI][hapmap]
rs4877815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5018100	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6559753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6559754	0.95[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6559756	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7020841	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7021189	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7045008	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs754144	0.83[CHB][hapmap]
rs7864367	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7869321	0.81[YRI][hapmap]
rs7869387	0.83[CHB][hapmap]
rs7875011	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7875242	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7875289	0.82[CHB][hapmap]
rs796000	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs796001	0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs796002	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv3328820	chr9:86613612-86634313	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86596400-86632400	Weak transcription	Spleen	Spleen
2	chr9:86597400-86628800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:86602400-86627200	Weak transcription	Left Ventricle	heart
4	chr9:86604000-86626200	Weak transcription	Pancreas	Pancrea
5	chr9:86604200-86623400	Weak transcription	Fetal Stomach	stomach
6	chr9:86606000-86624200	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:86616800-86623800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:86617600-86624400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:86617600-86624800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:86617600-86625000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:86617800-86623600	Weak transcription	A549	lung
12	chr9:86617800-86625800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:86618200-86625400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:86618400-86625400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:86618800-86624400	Weak transcription	Aorta	Aorta
16	chr9:86619800-86624400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:86620200-86623400	Weak transcription	Dnd41	blood
18	chr9:86622000-86624400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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