Variant report

Variant	rs7869321
Chromosome Location	chr9:86520782-86520783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86451626..86452376-chr9:86520762..86521311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226877	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10114889	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10868071	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10868076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11140251	0.88[CHB][hapmap]
rs11140253	0.88[CHB][hapmap]
rs11140265	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs11140304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12378956	0.94[CHB][hapmap]
rs12682981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13290882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13296528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs167203	0.83[CEU][hapmap]
rs1831757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1982151	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2378661	0.94[CHB][hapmap]
rs2576362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs2780103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs296886	0.82[CEU][hapmap]
rs296887	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs296888	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs296889	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs296890	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap]
rs296892	0.81[YRI][hapmap]
rs296893	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs3180887	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3818725	0.88[CHB][hapmap]
rs4147132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4147133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs4535826	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4877814	0.81[YRI][hapmap]
rs6559751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6559753	0.81[YRI][hapmap]
rs6559756	0.82[YRI][hapmap]
rs7020300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7021189	0.81[YRI][hapmap]
rs7033292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7047907	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7853377	0.83[CEU][hapmap]
rs7875011	0.81[YRI][hapmap]
rs9410888	0.88[CHB][hapmap]
rs963459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv438108	chr9:86488586-86542206	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	nsv968713	chr9:86517820-86522655	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86461600-86535400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:86461600-86535400	Weak transcription	Ovary	ovary
3	chr9:86462200-86535200	Weak transcription	Fetal Brain Female	brain
4	chr9:86462600-86535200	Weak transcription	Brain Anterior Caudate	brain
5	chr9:86481000-86535800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:86491000-86535200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:86491200-86535200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:86496000-86535000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:86496400-86533000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:86499400-86535000	Weak transcription	Fetal Kidney	kidney
11	chr9:86499800-86523200	Weak transcription	Fetal Thymus	thymus
12	chr9:86500000-86534800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:86500200-86521200	Weak transcription	Adipose Nuclei	Adipose
14	chr9:86500200-86521200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:86500200-86535200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:86500200-86535200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:86500200-86535600	Weak transcription	Lung	lung
18	chr9:86501200-86521600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:86502000-86532400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:86502600-86535000	Weak transcription	Fetal Lung	lung
21	chr9:86506400-86534800	Weak transcription	Pancreas	Pancrea
22	chr9:86508200-86535600	Weak transcription	Esophagus	oesophagus
23	chr9:86509000-86521200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:86512400-86535400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:86512600-86535400	Weak transcription	Placenta	Placenta
26	chr9:86513200-86534800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:86516200-86521400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:86516200-86535000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:86517400-86535200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr9:86517600-86535000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:86518200-86530800	Weak transcription	Spleen	Spleen
32	chr9:86518800-86523800	Weak transcription	Primary T cells from cord blood	blood
33	chr9:86518800-86526400	Weak transcription	Fetal Intestine Large	intestine
34	chr9:86518800-86535000	Weak transcription	Primary B cells from cord blood	blood
35	chr9:86518800-86535000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:86518800-86535200	Weak transcription	Thymus	Thymus
37	chr9:86519000-86535000	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:86519000-86535400	Weak transcription	Fetal Stomach	stomach
39	chr9:86520000-86533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:86520400-86535400	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links