Variant report

Variant	rs11140265
Chromosome Location	chr9:86445798-86445799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:86445740-86445890	BE2_C	brain:	n/a	n/a
2	CTCF	chr9:86445720-86445870	HRPEpiC	eye:	n/a	n/a
3	CTCF	chr9:86445700-86445850	HCPEpiC	choroid plexus:	n/a	n/a
4	CTCF	chr9:86445700-86445850	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr9:86445760-86445910	NHEK	skin:	n/a	n/a
6	CTCF	chr9:86445700-86445850	MCF-7	breast:	n/a	n/a
7	CTCF	chr9:86445700-86445850	AoAF	blood vessel:	n/a	n/a
8	CTCF	chr9:86445720-86445870	MCF-7	breast:	n/a	n/a
9	CTCF	chr9:86445700-86445850	BE2_C	brain:	n/a	n/a
10	CTCF	chr9:86445720-86445870	HPAF	blood vessel:	n/a	n/a
11	CTCF	chr9:86445720-86445870	AG04450	lung:	n/a	n/a
12	CTCF	chr9:86445700-86445850	NHEK	skin:	n/a	n/a
13	CTCF	chr9:86445700-86445850	HEEpiC	esophagus:	n/a	n/a
14	CTCF	chr9:86445680-86445830	HCPEpiC	choroid plexus:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86321607..86323730-chr9:86445405..86447358,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RMI1-5	chr9:86445783-86445854	ENSG00000226877.1

No data

Variant related genes	Relation type
GKAP1	TF binding region
ENSG00000231616	TF binding region
ENSG00000226877	TF binding region
ENSG00000254473	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10114889	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs10868071	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10868076	0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs11140253	0.80[CHB][hapmap]
rs11140304	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs12378956	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs12682981	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs13290882	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs13296528	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs1831757	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs1982151	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs2378661	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2576362	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs2780103	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs295289	0.92[ASN][1000 genomes]
rs296887	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs296888	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs296889	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs296890	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs296893	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs3119921	0.83[ASN][1000 genomes]
rs3180887	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs3818725	0.80[CHB][hapmap]
rs4147132	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs4147133	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs418816	0.82[ASN][1000 genomes]
rs419250	0.82[ASN][1000 genomes]
rs4535826	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs6559751	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs7020300	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs7033292	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7047907	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs7869321	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs9410888	0.94[CHB][hapmap]
rs963459	0.94[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2761538	chr9:86401015-86451943	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
6	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv6590	chr9:86435603-86480442	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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