Variant report

Variant	rs7047907
Chromosome Location	chr9:86368660-86368661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86350659..86352740-chr9:86367582..86369974,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10114889	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap]
rs10125556	0.84[CHB][hapmap]
rs10453251	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs10746724	0.83[CHB][hapmap]
rs10780628	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs10780631	0.82[CHB][hapmap]
rs10780633	0.83[CHB][hapmap]
rs10868046	0.84[CHB][hapmap]
rs10868047	0.84[CHB][hapmap]
rs10868048	0.83[CHB][hapmap]
rs10868052	0.84[CHB][hapmap]
rs10868053	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs10868054	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs10868057	0.84[CHB][hapmap]
rs10868060	0.84[CHB][hapmap]
rs10868061	0.83[CHB][hapmap]
rs10868062	0.83[CHB][hapmap]
rs10868063	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs10868071	0.93[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap]
rs11140237	0.84[CHB][hapmap]
rs11140242	0.84[CHB][hapmap]
rs11140243	0.84[CHB][hapmap]
rs11140247	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs11140251	0.82[CHB][hapmap]
rs11140253	0.82[CHB][hapmap]
rs11140265	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs11140304	0.94[CHB][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap]
rs12057022	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs12057070	0.83[CHB][hapmap]
rs12339076	0.84[CHB][hapmap]
rs12344567	0.82[CHB][hapmap]
rs12378956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12682981	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs13290882	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs13296528	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs1582396	0.84[CHB][hapmap]
rs1831757	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2098494	0.84[CHB][hapmap]
rs2111683	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs2160821	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs2287373	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs2378661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs295268	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs295271	0.84[CHB][hapmap]
rs295272	0.84[CHB][hapmap]
rs295280	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs295283	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs295289	0.80[EUR][1000 genomes]
rs295293	0.84[CHB][hapmap]
rs3119921	0.84[EUR][1000 genomes]
rs3180887	0.94[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap]
rs3763622	0.84[CHB][hapmap]
rs4147132	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs4147133	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs418816	0.82[EUR][1000 genomes]
rs419250	0.82[EUR][1000 genomes]
rs4242624	0.84[CHB][hapmap]
rs4535826	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap]
rs4601411	0.85[AFR][1000 genomes]
rs4750	0.84[CHB][hapmap]
rs4877809	0.84[CHB][hapmap]
rs4877810	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs4877811	0.84[CHB][hapmap]
rs6559742	0.81[CEU][hapmap];0.82[AFR][1000 genomes]
rs6559744	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6559751	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7020300	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs7021357	0.84[CHB][hapmap]
rs7031676	0.84[ASW][hapmap];0.84[CHB][hapmap]
rs7033292	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7042776	0.84[CHB][hapmap]
rs7044691	0.84[CHB][hapmap]
rs7855177	0.81[CEU][hapmap]
rs7864189	0.84[CHB][hapmap]
rs7869321	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs918223	0.84[CHB][hapmap]
rs9410888	0.82[CHB][hapmap]
rs963459	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv973432	chr9:86330626-86371524	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
2	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:86350200-86374600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:86350800-86407000	Weak transcription	Primary B cells from cord blood	blood
5	chr9:86351000-86393200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:86351400-86371000	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:86352000-86411800	Weak transcription	Ovary	ovary
8	chr9:86352600-86377800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:86352600-86398200	Weak transcription	Fetal Brain Female	brain
10	chr9:86352800-86369200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:86352800-86383200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:86353000-86432000	Weak transcription	Lung	lung
13	chr9:86354800-86380800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr9:86356000-86369400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr9:86357800-86398800	Weak transcription	Pancreas	Pancrea
16	chr9:86362600-86376200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:86362800-86374800	Weak transcription	Gastric	stomach
18	chr9:86362800-86376400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:86363800-86412400	Weak transcription	HepG2	liver
20	chr9:86363800-86431200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr9:86364800-86412000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:86364800-86413400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:86365600-86372000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:86365600-86375200	Weak transcription	Brain Germinal Matrix	brain
25	chr9:86366400-86375600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:86366600-86369000	Weak transcription	GM12878-XiMat	blood
27	chr9:86367000-86413600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr9:86367200-86368800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:86367200-86397600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:86367400-86369200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:86367400-86370800	Weak transcription	Fetal Intestine Small	intestine
32	chr9:86367400-86374000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:86367400-86411800	Weak transcription	Brain Substantia Nigra	brain
34	chr9:86367600-86369800	Weak transcription	Brain Anterior Caudate	brain
35	chr9:86367600-86374600	Weak transcription	Liver	Liver
36	chr9:86367600-86375800	Weak transcription	Fetal Intestine Large	intestine
37	chr9:86367600-86376200	Weak transcription	Primary T cells from cord blood	blood
38	chr9:86367600-86376400	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:86367600-86412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:86367800-86374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:86367800-86376800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:86367800-86397000	Weak transcription	Fetal Stomach	stomach
43	chr9:86367800-86397800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:86368000-86373600	Weak transcription	Fetal Thymus	thymus
45	chr9:86368000-86379200	Weak transcription	Thymus	Thymus
46	chr9:86368000-86398200	Weak transcription	Left Ventricle	heart
47	chr9:86368000-86398800	Weak transcription	Aorta	Aorta

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