Variant report

Variant	nsv825207
Chromosome Location	chr10:957020-1005451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1239)
CpG islands
(count:916)
Chromatin interactive
region (count:109)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1239 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:977720-977747	K562	blood:	n/a	n/a
2	ARID3A	chr10:975612-976178	K562	blood:	n/a	n/a
3	ARID3A	chr10:977654-977803	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:967804-967954	K562	blood:	n/a	n/a
5	ATF1	chr10:977597-977929	K562	blood:	n/a	n/a
6	ATF2	chr10:977473-977853	GM12878	blood:	n/a	n/a
7	BACH1	chr10:967719-967950	K562	blood:	n/a	n/a
8	BACH1	chr10:976720-976818	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr10:976057-976295	K562	blood:	n/a	n/a
10	BATF	chr10:989748-990049	GM12878	blood:	n/a	n/a
11	BATF	chr10:982588-982952	GM12878	blood:	n/a	n/a
12	BATF	chr10:982609-982943	GM12878	blood:	n/a	n/a
13	BCLAF1	chr10:975826-976665	GM12878	blood:	n/a	n/a
14	BCLAF1	chr10:976320-976797	GM12878	blood:	n/a	n/a
15	BHLHE40	chr10:977554-978115	K562	blood:	n/a	n/a
16	BHLHE40	chr10:982650-982975	GM12878	blood:	n/a	n/a
17	BHLHE40	chr10:975896-976809	GM12878	blood:	n/a	n/a
18	BHLHE40	chr10:967653-968020	K562	blood:	n/a	n/a
19	BHLHE40	chr10:990467-990813	GM12878	blood:	n/a	n/a
20	BHLHE40	chr10:977609-978009	HepG2	liver:	n/a	n/a
21	BHLHE40	chr10:990466-990731	K562	blood:	n/a	n/a
22	BHLHE40	chr10:995462-995623	K562	blood:	n/a	n/a
23	BHLHE40	chr10:982217-982270	K562	blood:	n/a	n/a
24	BHLHE40	chr10:977582-978159	GM12878	blood:	n/a	n/a
25	BHLHE40	chr10:976476-976810	K562	blood:	n/a	n/a
26	BRCA1	chr10:977564-977827	GM12878	blood:	n/a	n/a
27	BRCA1	chr10:977585-977787	H1-hESC	embryonic stem cell:	n/a	n/a
28	BRCA1	chr10:977555-977858	Hela-S3	cervix:	n/a	n/a
29	CCNT2	chr10:976675-978128	K562	blood:	n/a	n/a
30	CCNT2	chr10:1001902-1001966	K562	blood:	n/a	n/a
31	CEBPB	chr10:980342-980737	HepG2	liver:	n/a	chr10:980489-980498 chr10:980488-980499 chr10:980487-980498
32	CEBPB	chr10:980353-980643	IMR90	lung:	n/a	chr10:980489-980498 chr10:980488-980499 chr10:980487-980498
33	CEBPB	chr10:967649-967927	K562	blood:	n/a	chr10:967658-967669
34	CEBPB	chr10:977550-977764	K562	blood:	n/a	n/a
35	CEBPB	chr10:977555-977810	Hela-S3	cervix:	n/a	n/a
36	CEBPB	chr10:980445-980512	H1-hESC	embryonic stem cell:	n/a	chr10:980489-980498 chr10:980488-980499 chr10:980487-980498
37	CEBPB	chr10:980375-980636	K562	blood:	n/a	chr10:980489-980498 chr10:980488-980499 chr10:980487-980498
38	CEBPB	chr10:976002-976201	K562	blood:	n/a	n/a
39	CEBPB	chr10:977489-977746	HepG2	liver:	n/a	n/a
40	CEBPB	chr10:990364-990590	HepG2	liver:	n/a	n/a
41	CEBPB	chr10:980436-980636	A549	lung:	n/a	chr10:980489-980498 chr10:980488-980499 chr10:980487-980498
42	CEBPB	chr10:977648-977792	A549	lung:	n/a	n/a
43	CEBPB	chr10:992848-992874	HepG2	liver:	n/a	n/a
44	CHD1	chr10:975847-976842	GM12878	blood:	n/a	n/a
45	CHD1	chr10:976545-976804	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD1	chr10:975406-978308	IMR90	lung:	n/a	chr10:977804-977814 chr10:977690-977700
47	CHD2	chr10:976657-976885	H1-hESC	embryonic stem cell:	n/a	n/a
48	CHD2	chr10:977494-977954	GM12878	blood:	n/a	chr10:977804-977814 chr10:977690-977700
49	CHD2	chr10:977544-977899	H1-hESC	embryonic stem cell:	n/a	chr10:977804-977814 chr10:977690-977700
50	CHD2	chr10:989818-990218	GM12878	blood:	n/a	n/a

(count:916 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:968280-968330	Jurkat	blood:	n/a
2	chr10:968280-968330	Jurkat	blood:	n/a
3	chr10:978077-978127	SK-N-MC	brain:	n/a
4	chr10:1000300-1000350	MCF10A-Er-Src	breast:	n/a
5	chr10:977622-977672	HIPEpiC	eye:	n/a
6	chr10:957182-957232	NT2-D1	testis:	n/a
7	chr10:995095-995145	AG09309	skin:	n/a
8	chr10:976594-976644	MCF-7	breast:	n/a
9	chr10:976548-976598	HAEpiC	amniotic membrane:	n/a
10	chr10:957182-957232	H1-hESC	embryonic stem cell:	embryo
11	chr10:980765-980815	SK-N-SH_RA	brain:	n/a
12	chr10:1000300-1000350	AG09319	gingival:	n/a
13	chr10:976594-976644	SK-N-MC	brain:	n/a
14	chr10:976940-976990	BE2_C	brain:	n/a
15	chr10:1000300-1000350	HepG2	liver:	n/a
16	chr10:995290-995340	CMK	blood:	n/a
17	chr10:1000575-1000625	HCM	heart:	n/a
18	chr10:978019-978069	HL-60	blood:	n/a
19	chr10:995095-995145	HRPEpiC	eye:	n/a
20	chr10:976548-976598	HEK293	kidney:	embryo
21	chr10:974338-974388	ProgFib	skin:	n/a
22	chr10:1000575-1000625	HPAEpiC	pulmonary alveolar:	n/a
23	chr10:977622-977672	GM12892	blood:	n/a
24	chr10:995095-995145	PANC-1	pancreas:	n/a
25	chr10:976594-976644	HCM	heart:	n/a
26	chr10:995095-995145	LNCaP	prostate:	n/a
27	chr10:957182-957232	GM12878	blood:	n/a
28	chr10:978077-978127	Hepatocyte	liver:	n/a
29	chr10:980765-980815	GM12878	blood:	n/a
30	chr10:994943-994993	HPAEpiC	pulmonary alveolar:	n/a
31	chr10:968280-968330	AG04449	skin:	fetal
32	chr10:995290-995340	K562	blood:	n/a
33	chr10:1000300-1000350	IMR90	lung:	fetal
34	chr10:977622-977672	HNPCEpiC	eye:	n/a
35	chr10:994943-994993	HRCEpiC	kidney:	n/a
36	chr10:995290-995340	HIPEpiC	eye:	n/a
37	chr10:977622-977672	HEEpiC	esophagus:	n/a
38	chr10:976548-976598	HEEpiC	esophagus:	n/a
39	chr10:995290-995340	MCF10A-Er-Src	breast:	n/a
40	chr10:974338-974388	NHDF-neo	bronchial:	n/a
41	chr10:1000575-1000625	HCT-116	colon:	n/a
42	chr10:995095-995145	HCPEpiC	choroid plexus:	n/a
43	chr10:978019-978069	HCF	heart:	n/a
44	chr10:980765-980815	Hepatocyte	liver:	n/a
45	chr10:974338-974388	ECC-1	luminal epithelium:	n/a
46	chr10:977622-977672	HCF	heart:	n/a
47	chr10:974338-974388	SAEC	small airway:	n/a
48	chr10:995290-995340	ovcar-3	ovarian:	n/a
49	chr10:976548-976598	MCF-7	breast:	n/a
50	chr10:976940-976990	AG04450	lung:	fetal

(count:109 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr10:955284..957834-chr10:971133..973147,2	K562	blood:
2	chr10:991162..993286-chr10:1002150..1004961,2	K562	blood:
3	chr10:989315..991705-chr10:1095222..1096768,2	MCF-7	breast:
4	chr10:990098..992111-chr10:1033029..1035814,2	MCF-7	breast:
5	chr10:974339..976019-chr10:1070236..1073056,2	MCF-7	breast:
6	chr10:956864..959449-chr10:987864..990001,2	K562	blood:
7	chr10:980826..983608-chr10:1003068..1004956,2	K562	blood:
8	chr10:957934..960476-chr10:961613..963216,2	K562	blood:
9	chr10:974451..976397-chr10:1027362..1028867,2	MCF-7	breast:
10	chr10:993234..997786-chr10:1013619..1016483,4	MCF-7	breast:
11	chr10:993403..996250-chr10:1036309..1038565,2	K562	blood:
12	chr10:975309..980832-chr10:1031626..1035973,12	K562	blood:
13	chr10:974439..980732-chr10:1030011..1038533,28	MCF-7	breast:
14	chr10:953280..955249-chr10:957208..959936,2	MCF-7	breast:
15	chr10:987204..991340-chr10:993290..996064,4	MCF-7	breast:
16	chr10:972336..974147-chr10:1040690..1042738,2	K562	blood:
17	chr10:1000614..1004584-chr10:1019814..1022470,3	K562	blood:
18	chr10:989792..992480-chr10:1084980..1087131,2	MCF-7	breast:
19	chr10:957666..959470-chr10:975640..977548,2	K562	blood:
20	chr10:968239..971005-chr10:1062615..1065271,2	MCF-7	breast:
21	chr10:957934..960476-chr10:961613..963216,2	K562	blood:
22	chr10:983122..985079-chr10:1032458..1034401,2	K562	blood:
23	chr10:1000614..1004584-chr10:1019814..1022762,4	K562	blood:
24	chr10:976344..979673-chr10:1032747..1036349,14	K562	blood:
25	chr10:969783..971974-chr10:1038430..1041356,2	K562	blood:
26	chr10:1002020..1004924-chr10:1009202..1011501,2	MCF-7	breast:
27	chr10:954912..957818-chr10:959546..962502,2	K562	blood:
28	chr10:959058..959737-chr10:1016214..1016784,2	MCF-7	breast:
29	chr10:1002935..1005856-chr10:1082299..1084442,2	MCF-7	breast:
30	chr10:977686..978278-chr3:23958133..23959063,2	HCT-116	colon:
31	chr10:969504..972308-chr10:1100615..1103813,3	MCF-7	breast:
32	chr10:964099..966900-chr10:967663..969499,2	MCF-7	breast:
33	chr10:975330..979545-chr10:1093428..1097529,6	K562	blood:
34	chr10:987204..991340-chr10:993290..996064,4	MCF-7	breast:
35	chr10:974758..977274-chr10:1018618..1021450,2	K562	blood:
36	chr10:988532..990709-chr10:1000522..1003406,2	MCF-7	breast:
37	chr10:974758..976966-chr10:1110782..1112393,2	MCF-7	breast:
38	chr10:988056..990097-chr10:1030417..1032200,2	K562	blood:
39	chr10:976566..978917-chr20:33411823..33413821,2	MCF-7	breast:
40	chr10:982121..984896-chr10:984955..986688,2	K562	blood:
41	chr10:1004224..1005982-chr10:1009154..1011697,2	K562	blood:
42	chr10:963744..965681-chr10:975688..978221,2	MCF-7	breast:
43	chr10:955784..957552-chr10:964009..966938,2	K562	blood:
44	chr10:950294..953048-chr10:969646..972009,2	K562	blood:
45	chr10:949389..951942-chr10:967681..970288,3	MCF-7	breast:
46	chr10:980642..983775-chr10:1008969..1010804,3	K562	blood:
47	chr10:983630..985701-chr10:1101739..1103467,2	MCF-7	breast:
48	chr10:976152..979108-chr10:1085303..1088696,4	MCF-7	breast:
49	chr10:918982..920486-chr10:966895..969764,2	K562	blood:
50	chr10:955784..957552-chr10:964009..966938,2	K562	blood:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GTPBP4-3	chr10:978966-979055	ENSG00000229869.1
2	lnc-GTPBP4-3	chr10:978127-978179	NONHSAT010879
3	lnc-GTPBP4-3	chr10:968966-969055	NONHSAT010879
4	lnc-GTPBP4-3	chr10:988420-988683	ENSG00000229869.1
5	lnc-LARP4B-2	chr10:988075-988179	NONHSAT010884
6	lnc-GTPBP4-3	chr10:988127-988179	ENSG00000229869.1
7	lnc-LARP4B-2	chr10:988421-988583	NONHSAT010884
8	lnc-GTPBP4-3	chr10:978420-978683	NONHSAT010879
9	lnc-GTPBP4-3	chr10:987882-988179	NONHSAT010883
10	lnc-AL359878.1-2	chr10:958175-958406	expReg_chr10_76_-
11	lnc-AL359878.1-1	chr10:999388-1000122	NONHSAT010887
12	lnc-AL359878.1-1	chr10:997609-997718	NONHSAT010887
13	lnc-GTPBP4-3	chr10:988420-988828	NONHSAT010883

No data

Variant related genes	Relation type
ENSG00000229869	TF binding region
LARP4B	TF binding region
ENSG00000229869	CpG island
LARP4B	CpG island
ENSG00000047056	chromatin interactions
ENSG00000238924	chromatin interactions
ENSG00000205740	chromatin interactions
ENSG00000198646	chromatin interactions
ENSG00000229869	chromatin interactions
ENSG00000107937	chromatin interactions
ENSG00000148377	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000197885	chromatin interactions
ENSG00000107929	chromatin interactions
ENSG00000174748	chromatin interactions
ENSG00000067064	chromatin interactions

Extended variants
information (count: 1938 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:1938 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556840526	chr10:957020-957021	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs150198217	chr10:957022-957023	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs187534675	chr10:957054-957055	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs140692231	chr10:957083-957084	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs138770228	chr10:957147-957148	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs192880609	chr10:957156-957157	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs7917886	chr10:957166-957167	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs141656537	chr10:957182-957183	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs564277911	chr10:957205-957206	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs1106064	chr10:957211-957212	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs201612523	chr10:957222-957223	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs12357633	chr10:957246-957247	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs568745492	chr10:957273-957274	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs374991088	chr10:957283-957284	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs147075808	chr10:957314-957315	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs547952713	chr10:957362-957363	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs568161666	chr10:957379-957380	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs533609235	chr10:957396-957397	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs553731093	chr10:957423-957424	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs138473385	chr10:957426-957427	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs540165066	chr10:957428-957429	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs556877320	chr10:957460-957461	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs576784675	chr10:957469-957470	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs536074036	chr10:957510-957511	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs555959162	chr10:957516-957517	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs572506136	chr10:957548-957549	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs144037188	chr10:957593-957594	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs564546022	chr10:957621-957622	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs187926357	chr10:957623-957624	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs545719536	chr10:957632-957633	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs562464326	chr10:957650-957651	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs528307747	chr10:957677-957678	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs74116966	chr10:957683-957684	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs368669891	chr10:957684-957685	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs148384082	chr10:957700-957701	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs561682656	chr10:957710-957711	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs551477501	chr10:957735-957736	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs527426956	chr10:957797-957798	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs141136124	chr10:957825-957826	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs373274067	chr10:957895-957896	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs570458621	chr10:957903-957904	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs565020862	chr10:957906-957907	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs539465068	chr10:957911-957912	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs192849429	chr10:957938-957939	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs570374711	chr10:957979-957980	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs375099211	chr10:957987-957988	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs556043225	chr10:957989-957990	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs572540158	chr10:957998-957999	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs114085892	chr10:957999-958000	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs557947754	chr10:958035-958036	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1640 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
2	chr10:927600-972600	Weak transcription	Hela-S3	cervix
3	chr10:928000-963200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:928000-966400	Weak transcription	Small Intestine	intestine
5	chr10:929400-975800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:929400-976400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:931600-965400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:931600-967400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:931800-957600	Weak transcription	Aorta	Aorta
10	chr10:935400-964000	Weak transcription	Psoas Muscle	Psoas
11	chr10:940000-970200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:940200-967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:946000-965400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:946000-966600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:946200-965400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:947200-958400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:947800-975400	Weak transcription	Fetal Brain Male	brain
18	chr10:948800-958600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:949000-959800	Strong transcription	Dnd41	blood
20	chr10:949600-959000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:949600-965400	Weak transcription	Right Ventricle	heart
22	chr10:949600-974600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:950800-958400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:951000-975400	Weak transcription	Fetal Kidney	kidney
25	chr10:951400-958000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr10:951400-958800	Strong transcription	Fetal Stomach	stomach
27	chr10:951600-958600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:952000-958000	Strong transcription	Placenta	Placenta
29	chr10:952200-957400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:952200-958000	Strong transcription	Primary B cells from cord blood	blood
31	chr10:952200-958200	Strong transcription	Fetal Muscle Leg	muscle
32	chr10:952400-958000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr10:952400-958000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:952600-958200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr10:952600-967800	Weak transcription	Brain Angular Gyrus	brain
36	chr10:952600-971000	Weak transcription	Brain Substantia Nigra	brain
37	chr10:952600-975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:952800-958200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:952800-958200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:952800-966000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:953000-958400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr10:953000-965200	Weak transcription	Pancreas	Pancrea
43	chr10:953000-967400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:953000-974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:953200-957600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:953600-958000	Strong transcription	Fetal Thymus	thymus
47	chr10:953600-958000	Strong transcription	Spleen	Spleen
48	chr10:953600-958800	Strong transcription	Fetal Intestine Small	intestine
49	chr10:953800-958000	Strong transcription	Primary T cells from cord blood	blood
50	chr10:953800-958200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links