Variant report

Variant	rs551477501
Chromosome Location	chr10:957735-957736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:956527..958686-chr10:976299..978141,3	MCF-7	breast:
2	chr10:956864..959449-chr10:987864..990001,2	K562	blood:
3	chr10:955284..957834-chr10:971133..973147,2	K562	blood:
4	chr10:951945..954088-chr10:957080..959590,3	MCF-7	breast:
5	chr10:954912..957818-chr10:959546..962502,2	K562	blood:
6	chr10:953280..955249-chr10:957208..959936,2	MCF-7	breast:
7	chr10:957384..959889-chr10:967554..970347,2	MCF-7	breast:
8	chr10:956519..959193-chr10:962678..964562,2	MCF-7	breast:
9	chr10:957666..959470-chr10:975640..977548,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000107929	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
16	nsv825207	chr10:957020-1005451	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
2	chr10:927600-972600	Weak transcription	Hela-S3	cervix
3	chr10:928000-963200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:928000-966400	Weak transcription	Small Intestine	intestine
5	chr10:929400-975800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:929400-976400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:931600-965400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:931600-967400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:935400-964000	Weak transcription	Psoas Muscle	Psoas
10	chr10:940000-970200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:940200-967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:946000-965400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:946000-966600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:946200-965400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:947200-958400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:947800-975400	Weak transcription	Fetal Brain Male	brain
17	chr10:948800-958600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:949000-959800	Strong transcription	Dnd41	blood
19	chr10:949600-959000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:949600-965400	Weak transcription	Right Ventricle	heart
21	chr10:949600-974600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:950800-958400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:951000-975400	Weak transcription	Fetal Kidney	kidney
24	chr10:951400-958000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr10:951400-958800	Strong transcription	Fetal Stomach	stomach
26	chr10:951600-958600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:952000-958000	Strong transcription	Placenta	Placenta
28	chr10:952200-958000	Strong transcription	Primary B cells from cord blood	blood
29	chr10:952200-958200	Strong transcription	Fetal Muscle Leg	muscle
30	chr10:952400-958000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:952400-958000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:952600-958200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:952600-967800	Weak transcription	Brain Angular Gyrus	brain
34	chr10:952600-971000	Weak transcription	Brain Substantia Nigra	brain
35	chr10:952600-975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:952800-958200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:952800-958200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:952800-966000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:953000-958400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:953000-965200	Weak transcription	Pancreas	Pancrea
41	chr10:953000-967400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:953000-974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:953600-958000	Strong transcription	Fetal Thymus	thymus
44	chr10:953600-958000	Strong transcription	Spleen	Spleen
45	chr10:953600-958800	Strong transcription	Fetal Intestine Small	intestine
46	chr10:953800-958000	Strong transcription	Primary T cells from cord blood	blood
47	chr10:953800-958200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:953800-958200	Strong transcription	Fetal Muscle Trunk	muscle
49	chr10:954200-958000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:954200-958000	Strong transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links