Variant report

Variant	nsv825506
Chromosome Location	chr10:91483821-91484704
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91459598..91461760-chr10:91483207..91485724,2	MCF-7	breast:
2	chr10:91480506..91482612-chr10:91483593..91486350,2	K562	blood:

Variant related genes	Relation type
ENSG00000138182	chromatin interactions

Extended variants
information (count: 50 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371085455	chr10:91483850-91483851	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs373845924	chr10:91483866-91483867	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs367654830	chr10:91483876-91483877	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs370512776	chr10:91483877-91483878	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs7079174	chr10:91483908-91483909	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs7101125	chr10:91483910-91483911	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs75333562	chr10:91483911-91483912	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs201777411	chr10:91483917-91483918	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs149079874	chr10:91483959-91483960	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs142184080	chr10:91484022-91484023	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs10881637	chr10:91484049-91484050	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs569823496	chr10:91484057-91484058	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs559923106	chr10:91484073-91484074	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs554302839	chr10:91484074-91484075	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs535725348	chr10:91484081-91484082	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs536920638	chr10:91484082-91484083	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs556817414	chr10:91484085-91484086	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs375084798	chr10:91484089-91484090	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs545871925	chr10:91484095-91484096	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs141322260	chr10:91484113-91484114	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs80347272	chr10:91484115-91484116	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs573213300	chr10:91484130-91484131	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs542322775	chr10:91484138-91484139	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs562235199	chr10:91484145-91484146	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs531103671	chr10:91484148-91484149	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs551230293	chr10:91484169-91484170	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs10881638	chr10:91484211-91484212	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs74677533	chr10:91484217-91484218	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs138791280	chr10:91484246-91484247	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs188240419	chr10:91484250-91484251	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs565679241	chr10:91484302-91484303	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs111919014	chr10:91484326-91484327	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs528141454	chr10:91484330-91484331	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs547904061	chr10:91484368-91484369	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs567844278	chr10:91484388-91484389	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs140454807	chr10:91484421-91484422	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs556780564	chr10:91484434-91484435	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs570656408	chr10:91484456-91484457	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs539726817	chr10:91484463-91484464	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs560677493	chr10:91484469-91484470	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs368390709	chr10:91484482-91484483	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs553056154	chr10:91484483-91484484	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs573209583	chr10:91484530-91484531	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs572264024	chr10:91484531-91484532	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs113394547	chr10:91484535-91484536	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs555881456	chr10:91484539-91484540	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs575848240	chr10:91484587-91484588	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs544815916	chr10:91484618-91484619	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs138344844	chr10:91484666-91484667	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs9919501	chr10:91484680-91484681	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:137 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
6	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:91462200-91505800	Weak transcription	Gastric	stomach
9	chr10:91462200-91505800	Weak transcription	Lung	lung
10	chr10:91462400-91484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:91463400-91484200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:91464000-91486800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:91466200-91484200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:91467200-91489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:91467200-91489000	Weak transcription	K562	blood
24	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
25	chr10:91467400-91498200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
27	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
28	chr10:91468600-91488000	Weak transcription	Aorta	Aorta
29	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:91469200-91505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:91469400-91494800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:91470000-91503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:91470200-91484600	Weak transcription	Ovary	ovary
35	chr10:91470200-91505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:91470400-91486600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:91470400-91494800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:91472400-91484000	Weak transcription	Thymus	Thymus
39	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:91473600-91505600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:91473800-91505800	Weak transcription	Liver	Liver
42	chr10:91474600-91486600	Weak transcription	Brain Germinal Matrix	brain
43	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr10:91475000-91494800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:91475200-91492000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:91476000-91505400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
48	chr10:91476400-91508000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:91476800-91505600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:91477600-91491400	Weak transcription	Adipose Nuclei	Adipose

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